Browse Element(s) Details


Os.52933.1.S1_at

Description gb:AK069986.1
DB_XREF= gi:32980010
TID=Os.52933.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.52933 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023039B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023039B08, full insert sequence.
FL= gb:AK069986.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0450011/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04460Os.5553.1.S1_at11/113+2048569..2052341Eukaryotic porin family protein, expressed
LOC_Os03g04460Os.55320.1.S1_at11/113+2048569..2052341Eukaryotic porin family protein, expressed
LOC_Os03g04470OsAffx.3129.1.S1_x_at11/113+2052531..2054102expressed protein
LOC_Os03g04470Os.10426.1.S1_at10/113+2052531..2054102expressed protein
LOC_Os03g04480Os.52832.1.S1_at11/113+2054433..2056747CorA-like Mg2+ transporter protein, expressed
LOC_Os03g04490Os.47965.1.A1_at11/113+2067784..2070814Cyclin-dependent kinase inhibitor family protein, expressed
LOC_Os03g04494NANA3+2076561..2076858NA
LOC_Os03g04500Os.52933.1.S1_at11/113+2076715..2081114TPR Domain containing protein, expressed
LOC_Os03g04520Os.9132.1.A1_at11/113+2082423..2091256RNA recognition motif family protein, expressed
LOC_Os03g04530Os.18623.1.S1_at11/113+2094285..2096105Cytochrome P450 family protein, expressed
LOC_Os03g04530Os.29745.1.S2_at1/113+2094285..2096105Cytochrome P450 family protein, expressed
LOC_Os03g04540OsAffx.24963.1.S1_at11/113+2096791..2097138hypothetical protein
LOC_Os03g04550Os.5899.1.S1_at11/113+2102803..2104757expressed protein
LOC_Os03g04560OsAffx.24964.4.S1_x_at11/113+2105102..2108575hypothetical protein
LOC_Os03g04560OsAffx.24964.3.S1_x_at1/113+2105102..2108575hypothetical protein
LOC_Os03g04560OsAffx.24964.2.S1_x_at1/113+2105102..2108575hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009846biological_processpollen germination
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52933.1.S1_at--363--9831Chr03:2080363..2080387 (25 bp)
TAAAAGCTATCAGCCCATACTCTGC
LOC_Os03g04500
Os.52933.1.S1_at--371--9191Chr03:2080385..2080408 (24 bp)
TGCCTTGGCTTTTCATGCTACAGGA
LOC_Os03g04500
Os.52933.1.S1_at--27--4971Chr03:2080615..2080639 (25 bp)
GCATACTCAACAGCATTGGACCTTG
LOC_Os03g04500
Os.52933.1.S1_at--1080--8091Chr03:2080632..2080656 (25 bp)
GGACCTTGAACCTAGACATGTACCA
LOC_Os03g04500
Os.52933.1.S1_at--175--2491Chr03:2080668..2080692 (25 bp)
AACAGCTATTGTTCTTCGACGGCTT
LOC_Os03g04500
Os.52933.1.S1_at--913--3631Chr03:2080704..2080728 (25 bp)
CTTGCCTGCTGTAAGGTGTTTCCTA
LOC_Os03g04500
Os.52933.1.S1_at--426--7431Chr03:2080719..2080743 (25 bp)
GTGTTTCCTAACTGATGCATTGCAA
LOC_Os03g04500
Os.52933.1.S1_at--925--2071Chr03:2080962..2080986 (25 bp)
ACATTTTTTCCCCTTCTGGTGCATT
LOC_Os03g04500
Os.52933.1.S1_at--105--3911Chr03:2080977..2081001 (25 bp)
CTGGTGCATTCTTTTTGTGCTTCAC
LOC_Os03g04500
Os.52933.1.S1_at--185--4911Chr03:2080995..2081019 (25 bp)
GCTTCACCATCCCAACATTTAGGAG
LOC_Os03g04500
Os.52933.1.S1_at--417--7011Chr03:2081054..2081078 (25 bp)
GTACACGTGTACAATTGTTACCCCA
LOC_Os03g04500
Target Sequence 
TAAAAGCTATCAGCCCATACTCTGCCTTGGCTTTTCATGCTACAGGAAAGCTACATGAAGCAAAAGGTTTTCTAAAGGAA
GCTCTTCGAGCATACTCAACAGCATTGGACCTTGAACCTAGACATGTACCAAGTTTGATATCAACAGCTATTGTTCTTCG
ACGGCTTGGCGAGAGACCCTTGCCTGCTGTAAGGTGTTTCCTAACTGATGCATTGCAATTAGACAGAACAAATCATATTG
CGTGGTTGAANCTTGGCTTACTATACGAAGATGAAGGGGGCAGTTCAGCACTTGAAGCTGCTGAATGTTTTCAGACTGCT
GCTCTTCTTGAAGAAACTAACCCAGTAGAACCTTTTAGATGACACAGATTGTACTCAAATTGAATGTTTTAGGGAGATTG
CTATAGTACAAAGTACTTTCACAACACAGTTTCTAAACATTTTTTCCCCTTCTGGTGCATTCTTTTTGTGCTTCACCATC
CCAACATTTAGGAGAGGAGAGTGTGTAAAGTGCATTAATTACAAACACGTACACGTGTACAATTGTTACCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52933.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis