Browse Element(s) Details


Os.5899.1.S1_at

Description gb:AK102410.1
DB_XREF= gi:32987619
TID=Os.5899.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5899 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033092N11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033092N11, full insert sequence.
FL= gb:AK102410.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0455011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04500Os.52933.1.S1_at11/113+2076715..2081114TPR Domain containing protein, expressed
LOC_Os03g04520Os.9132.1.A1_at11/113+2082423..2091256RNA recognition motif family protein, expressed
LOC_Os03g04530Os.18623.1.S1_at11/113+2094285..2096105Cytochrome P450 family protein, expressed
LOC_Os03g04530Os.29745.1.S2_at1/113+2094285..2096105Cytochrome P450 family protein, expressed
LOC_Os03g04540OsAffx.24963.1.S1_at11/113+2096791..2097138hypothetical protein
LOC_Os03g04550Os.5899.1.S1_at11/113+2102803..2104757expressed protein
LOC_Os03g04560OsAffx.24964.4.S1_x_at11/113+2105102..2108575hypothetical protein
LOC_Os03g04560OsAffx.24964.3.S1_x_at1/113+2105102..2108575hypothetical protein
LOC_Os03g04560OsAffx.24964.2.S1_x_at1/113+2105102..2108575hypothetical protein
LOC_Os03g04570Os.17182.1.S1_at11/113+2111087..2115836POT family protein, expressed
LOC_Os03g04570Os.46546.2.S1_x_at1/113+2111087..2115836POT family protein, expressed
LOC_Os03g04580Os.48474.1.S1_at11/113+2119027..2120225expressed protein
LOC_Os03g04590Os.12361.1.S1_at8/113+2121836..212460060S ribosomal protein L23, putative, expressed
LOC_Os03g04600Os.10015.1.S1_s_at11/113+2124876..2129630expressed protein
LOC_Os03g04600Os.10015.1.S1_at11/113+2124876..2129630expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5899.1.S1_at--22--6451Chr03:2104119..2104143 (25 bp)
GATCAGCCGAGAAGACCGGCCGATC
LOC_Os03g04550
Os.5899.1.S1_at--315--8131Chr03:2104164..2104188 (25 bp)
GGACATCAAGATATCCTCTGCCAAC
LOC_Os03g04550
Os.5899.1.S1_at--270--9491Chr03:2104180..2104204 (25 bp)
TCTGCCAACTCGTCTCCGAGGAGGT
LOC_Os03g04550
Os.5899.1.S1_at--968--5651Chr03:2104231..2104255 (25 bp)
GACATGCCCATCCTGGGAACCGTGG
LOC_Os03g04550
Os.5899.1.S1_at--13--10431Chr03:2104260..2104284 (25 bp)
TTACTGGAATTGCAGCTCCAAGGCT
LOC_Os03g04550
Os.5899.1.S1_at--1006--9191Chr03:2104276..2104300 (25 bp)
TCCAAGGCTGGTGATCCGGTGACAA
LOC_Os03g04550
Os.5899.1.S1_at--308--5211Chr03:2104465..2104489 (25 bp)
GAATTGCTACTGAAAGCTTCCAAGC
LOC_Os03g04550
Os.5899.1.S1_at--698--1191Chr03:2104588..2104612 (25 bp)
AGTAGTGGCATGCTTTATTCAAAGA
LOC_Os03g04550
Os.5899.1.S1_at--878--6631Chr03:2104638..2104662 (25 bp)
GTTGTAAACAATGTCCATCCATATT
LOC_Os03g04550
Os.5899.1.S1_at--793--8391Chr03:2104688..2104712 (25 bp)
GGCGCTGTCGATATGGTGTATTGTT
LOC_Os03g04550
Os.5899.1.S1_at--132--10111Chr03:2104731..2104755 (25 bp)
TATGGTGTATTGCACTTATGCCTTT
LOC_Os03g04550
Target Sequence 
GATCAGCCGAGAAGACCGGCCGATCCTTGGGGCCCTGACCGTGGAGGACATCAAGATATCCTCTGCCAACTCGTCTCCGA
GGAGGTCGAGGTCTCCGAGCCCGAGCCCTGACGACATGCCCATCCTGGGAACCGTGGGGGCTTACTGGAATTGCAGCTCC
AAGGCTGGTGATCCGGTGACAAGAGGAGGGTTTATGAGGACTAGAACAAGGTTTGGGCAGAACTTTGCAGGATGAAGTGG
TGAATTGCTACTGAAAGCTTCCAAGCTGGAAGCTGGAAGAGTTTGGTTTCAGGAGGAAAATTGCAGAAGATGCATACATG
CTTTTGTGAGAAGAACNTACATATAGAGTCAGTGAGATTGTGGAAGTAGTGGCATGCTTTATTCAAAGATGTTGCTTGTC
AAATTCTTTTATTTGTTGTAAACAATGTCCATCCATATTCTATTATGGTGATCTTTTTTTTTTTNNNNGGCGCTGTCGAT
ATGGTGTATTGTTTCGATGTTACATTGTCAATATGGTGTATTGCACTTATGCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5899.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis