Browse Element(s) Details


Os.12361.1.S1_at

Description gb:BE040126
DB_XREF= gi:8335142
DB_XREF=OD102A11
TID=Os.12361.1
CNT=49
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.12361 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with strong similarity to protein ref:NP_180895.1 (A.thaliana) 60S ribosomal protein L23 (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g045908/1160S ribosomal protein L23, putative, expressed
LOC_Os05g326001/11CDC2+/CDC28-related protein kinase R2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04540OsAffx.24963.1.S1_at11/113+2096791..2097138hypothetical protein
LOC_Os03g04550Os.5899.1.S1_at11/113+2102803..2104757expressed protein
LOC_Os03g04560OsAffx.24964.4.S1_x_at11/113+2105102..2108575hypothetical protein
LOC_Os03g04560OsAffx.24964.3.S1_x_at1/113+2105102..2108575hypothetical protein
LOC_Os03g04560OsAffx.24964.2.S1_x_at1/113+2105102..2108575hypothetical protein
LOC_Os03g04570Os.17182.1.S1_at11/113+2111087..2115836POT family protein, expressed
LOC_Os03g04570Os.46546.2.S1_x_at1/113+2111087..2115836POT family protein, expressed
LOC_Os03g04580Os.48474.1.S1_at11/113+2119027..2120225expressed protein
LOC_Os03g04590Os.12361.1.S1_at8/113+2121836..212460060S ribosomal protein L23, putative, expressed
LOC_Os03g04600Os.10015.1.S1_s_at11/113+2124876..2129630expressed protein
LOC_Os03g04600Os.10015.1.S1_at11/113+2124876..2129630expressed protein
LOC_Os03g04610Os.20338.1.S1_at3/113+2133780..2134692expressed protein
LOC_Os03g04620Os.9661.1.S1_at11/113+2138442..2142449CCT motif family protein, expressed
LOC_Os03g04630OsAffx.24965.1.S1_at11/113+2149324..2151056Cytochrome P450 family protein

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0000079biological_processregulation of cyclin dependent protein kinase activity
GO:0000086biological_processG2/M transition of mitotic cell cycle
GO:0000910biological_processcytokinesis
GO:0006412biological_processprotein biosynthesis
GO:0016572biological_processhistone phosphorylation
GO:0030154biological_processcell differentiation
GO:0042023biological_processDNA endoreduplication
GO:0000307cellular_componentcyclin-dependent protein kinase holoenzyme complex
GO:0000311cellular_componentplastid large ribosomal subunit
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005840cellular_componentribosome
GO:0009574cellular_componentpreprophase band
GO:0010005cellular_componentcortical microtubule (sensu Viridiplantae)
GO:0003735molecular_functionstructural constituent of ribosome
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12361.1.S1_at--641--1811Chr03:2124283..2124307 (25 bp)
ACCCATCGGGAAGGAGTGTGCTGAC
LOC_Os03g04590
Os.12361.1.S1_at--841--3851Chr03:2124303..2124327 (25 bp)
CTGACCTTTGGCCTAGGATAGCTAG
LOC_Os03g04590
Os.12361.1.S1_at--564--4871Chr03:2124338..2124362 (25 bp)
GCTATTGTCTGAGCTTGTTTGAATG
LOC_Os03g04590
Os.12361.1.S1_at--417--5651Chr03:2124371..2124395 (25 bp)
GACAGCTATATGACCTCAGGATCGT
LOC_Os03g04590
Os.12361.1.S1_at--111--7871Chr03:2124404..2124428 (25 bp)
GGTTTACTAGGACAACTGTGGAACT
LOC_Os03g04590
Os.12361.1.S1_at--751--8971Chr03:2124469..2124493 (25 bp)
TGAACAGAAGTTGCCATCCATATGA
LOC_Os03g04590
Os.12361.1.S1_at--814--10351Chr03:2124497..2124521 (25 bp)
TTTATTTGCCATCTATCTTTCTGCT
LOC_Os03g04590
Os.12361.1.S1_at--468--8671NONE
TGTGGGCTGCCTCATATTTCATTGC
NONE
Os.12361.1.S1_at--1034--171NONE
ATTTCATTGCCTTGTGTAACAGCGT
NONE
Os.12361.1.S1_at--31--2291NONE
AAATGCCCTATTTTTCTGTGCTGTA
NONE
Os.12361.1.S1_at--564--9472Chr05:19002168..19002334 (25 bp)
TCTGTGCTGTATTAATTCTCTGTAT
LOC_Os05g32600
Target Sequence 
ACCCATCGGGAAGGAGTGTGCTGACCTTTGGCCTAGGATAGCTAGTGCAGCAAATGCTATTGTCTGAGCTTGTTTGAATG
AATTGTAAGACAGCTATATGACCTCAGGATCGTCTGCAAATGGTTTACTAGGACAACTGTGGAACTTTGTGATGCTATCG
TTTGTTTGCCCGTTNCAGTTTTGTAGTGAACAGAAGTTGCCATCCATATGATATTTTATTTGCCATCTATCTTTCTGCTN
NNNNNNTNTNTNNNTNNNANNNNNNNNGTNNNNNAATNANNCCNNCNGTNNNNNNNNNNTTNNNNNNNAANNNTNTNNNN
NNANCCATGTCCTCCATCTGTGGGCTGCCTCATATTTCATTGCCTTGTGTAACAGCGTNGCTGGCTTGAAAAATTTGGAT
TGCCATGAAGCGAATATTCCCCCACCTAAAATTCAAAATGCCCTATTTTTCTGTGCTGTATTAATTCTCTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12361.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis