Browse Element(s) Details


OsAffx.24965.1.S1_at

Description tigr:9631.m00378
TID=OsAffx.24965.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AL161595 cytochrome P450-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0463011/11Cytochrome P450 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04590Os.12361.1.S1_at8/113+2121836..212460060S ribosomal protein L23, putative, expressed
LOC_Os03g04600Os.10015.1.S1_s_at11/113+2124876..2129630expressed protein
LOC_Os03g04600Os.10015.1.S1_at11/113+2124876..2129630expressed protein
LOC_Os03g04610Os.20338.1.S1_at3/113+2133780..2134692expressed protein
LOC_Os03g04620Os.9661.1.S1_at11/113+2138442..2142449CCT motif family protein, expressed
LOC_Os03g04630OsAffx.24965.1.S1_at11/113+2149324..2151056Cytochrome P450 family protein
LOC_Os03g04640OsAffx.3130.1.S1_at11/113+2157804..2159327Cytochrome P450 family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24965.1.S1_at--472--5911Chr03:2150386..2150410 (25 bp)
GAGCTCAAGTCACTCGTGTACCTGC
LOC_Os03g04630
OsAffx.24965.1.S1_at--570--7451Chr03:2150419..2150443 (25 bp)
GTGTGCGAGTCGCTTAGGCTCTACC
LOC_Os03g04630
OsAffx.24965.1.S1_at--140--8791Chr03:2150448..2150472 (25 bp)
TGTTCCGCTGGACCACAAAGGCGTG
LOC_Os03g04630
OsAffx.24965.1.S1_at--752--2211Chr03:2150501..2150525 (25 bp)
ACAAGGTGCGCCCTGGTGACAAGAT
LOC_Os03g04630
OsAffx.24965.1.S1_at--7--1291Chr03:2150522..2150546 (25 bp)
AGATCGTGGTGTCCATCTATGCGAT
LOC_Os03g04630
OsAffx.24965.1.S1_at--465--8471Chr03:2150717..2150741 (25 bp)
TGGCGGCTACTGTGGTGAAGAACTT
LOC_Os03g04630
OsAffx.24965.1.S1_at--176--1291Chr03:2150744..2150768 (25 bp)
AGATCGAGGCCGTGCCAGGACATAT
LOC_Os03g04630
OsAffx.24965.1.S1_at--966--1611Chr03:2150780..2150804 (25 bp)
AGCTGTCCATGGTTCTCCACATGAA
LOC_Os03g04630
OsAffx.24965.1.S1_at--483--5331Chr03:2150955..2150977 (23 bp)
GAAGTTTGCTGGGACCGTCTTTCAG
LOC_Os03g04630
OsAffx.24965.1.S1_at--1039--8771Chr03:2150982..2151006 (25 bp)
TGTTTAGATCTCATTGGCTGCACCC
LOC_Os03g04630
OsAffx.24965.1.S1_at--726--3351Chr03:2151002..2151026 (25 bp)
CACCCGTGCTTTATACTTGTACCTA
LOC_Os03g04630
Target Sequence 
GAGCTCAAGTCACTCGTGTACCTGCACGCCGCCGTGTGCGAGTCGCTTAGGCTCTACCCACCTGTTCCGCTGGACCACAA
AGGCGTGGTTGCCGCCGACGTGATGCCGAGCGGGCACAAGGTGCGCCCTGGTGACAAGATCGTGGTGTCCATCTATGCGA
TGGGTAGGACGGAGTCCGTGTGGGGCAGCGACTGCATGGAGTTCAGGCCGGAGCGGTGGATCTCCGACGACGGCAAGCTG
CGGTACGTGCCGTCGTACAAGTTCACGCCCTTCATCACGGGGCCTCGGACCTGCCTAGGCAAGGACATGGCGTTAGTGCA
GCTCAAGGTCGTGGCGGCTACTGTGGTGAAGAACTTCGAGATCGAGGCCGTGCCAGGACATATCGTGGAGCCCAAGCTGT
CCATGGTTCTCCACATGAAGAATGGCTTAATGGTCAGGGTTAAGAGAAGTTTGCTGGGACCGTCTTTCAGTTCATGTTTA
GATCTCATTGGCTGCACCCGTGCTTTATACTTGTACCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24965.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis