Browse Element(s) Details


Os.20338.1.S1_at

Description gb:AK070427.1
DB_XREF= gi:32980451
TID=Os.20338.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20338 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023050D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023050D10, full insert sequence.
FL= gb:AK070427.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g046103/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04570Os.17182.1.S1_at11/113+2111087..2115836POT family protein, expressed
LOC_Os03g04570Os.46546.2.S1_x_at1/113+2111087..2115836POT family protein, expressed
LOC_Os03g04580Os.48474.1.S1_at11/113+2119027..2120225expressed protein
LOC_Os03g04590Os.12361.1.S1_at8/113+2121836..212460060S ribosomal protein L23, putative, expressed
LOC_Os03g04600Os.10015.1.S1_s_at11/113+2124876..2129630expressed protein
LOC_Os03g04600Os.10015.1.S1_at11/113+2124876..2129630expressed protein
LOC_Os03g04610Os.20338.1.S1_at3/113+2133780..2134692expressed protein
LOC_Os03g04620Os.9661.1.S1_at11/113+2138442..2142449CCT motif family protein, expressed
LOC_Os03g04630OsAffx.24965.1.S1_at11/113+2149324..2151056Cytochrome P450 family protein
LOC_Os03g04640OsAffx.3130.1.S1_at11/113+2157804..2159327Cytochrome P450 family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20338.1.S1_at--61--6451Chr03:2134497..2134521 (25 bp)
GATCATGGACTTGGAATAGCTGCGA
LOC_Os03g04610
Os.20338.1.S1_at--1042--1471Chr03:2134549..2134573 (25 bp)
AGCAAGAGGGCTCTGATTTACTCTG
LOC_Os03g04610
Os.20338.1.S1_at--1073--9331Chr03:2134576..2134600 (25 bp)
TCGCGGTACCTGTGCCTGAGGCAAC
LOC_Os03g04610
Os.20338.1.S1_at--607--2031Chr03:7648789..7648813 (25 bp)
ACTAGCTTAGCTTGTGGCAGCGCAC
NONE
Os.20338.1.S1_at--813--8251Chr03:7648774..7648798 (25 bp)
GGCAGCGCACTACGCTTCTAGAAGA
NONE
Os.20338.1.S1_at--133--10111Chr03:7648695..7648719 (25 bp)
TATGGTGCGCGTGACGTTCGTCTAG
NONE
Os.20338.1.S1_at--673--6711Chr03:7648680..7648704 (25 bp)
GTTCGTCTAGCTTGGAAGTGTCCGC
NONE
Os.20338.1.S1_at--55--2871Chr03:7648665..7648689 (25 bp)
AAGTGTCCGCACGTATGACCTGGTG
NONE
Os.20338.1.S1_at--969--7871Chr03:7648621..7648645 (25 bp)
GGTTAACTTATACTAGTCCGGAGAT
NONE
Os.20338.1.S1_at--195--291Chr03:7648554..7648578 (25 bp)
ATAGTGATTTGTATGTCTCCTTGCA
NONE
Os.20338.1.S1_at--202--10571NONE
TTCTTTGAGAGGAAGGCACCACATT
NONE
Target Sequence 
GATCATGGACTTGGAATAGCTGCGATGGATGGAGATGAGAAGCAGATGGAGGAGCAAGAGGGCTCTGATTTACTCTGCCT
CGCGGTACCTGTGCCTGAGGCAACAAATTNTTNNTGAGTTAGCACTTGGCACAAAACTNGTTGTACAATTGCATATATCA
GATATTGTCATGTAGAGATGGCTTTGAANNNNNNNNNNNNNNNANNNNNNNNNNANGCACACTAGCTTAGCTTGTGGCAG
CGCACTACGCTTCTAGAAGAAATGGCCCNTTTACTGGNTCTTTCACGTCTCGTTGTGAACTTGTAAAAGGAAAATGTATG
GTGCGCGTGACGTTCGTCTAGCTTGGAAGTGTCCGCACGTATGACCTGGTGCGCGGTGCTTGATAGCATAGGTTAACTTA
TACTAGTCCGGAGATAAGGCTGAGAGCCACAACAATAATGGAGCAGAGACCAGGAAGATAGTGATTTGTATGTCTCCTTG
CATACTCTTCTTCTTCTTCAGTGTGTGGTGAATGCAGATGGTGTGGGCAGTTTGTGGNNNNNNNNNNNNNNNNNNNNNNN
NNTTTTTCTTTGAGAGGAAGGCACCACATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20338.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis