Browse Element(s) Details


Os.18623.1.S1_at

Description gb:AK105857.1
DB_XREF= gi:32991066
TID=Os.18623.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18623 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-203-H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-203-H07, full insert sequence.
FL= gb:AK105857.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0453011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04490Os.47965.1.A1_at11/113+2067784..2070814Cyclin-dependent kinase inhibitor family protein, expressed
LOC_Os03g04494NANA3+2076561..2076858NA
LOC_Os03g04500Os.52933.1.S1_at11/113+2076715..2081114TPR Domain containing protein, expressed
LOC_Os03g04520Os.9132.1.A1_at11/113+2082423..2091256RNA recognition motif family protein, expressed
LOC_Os03g04530Os.18623.1.S1_at11/113+2094285..2096105Cytochrome P450 family protein, expressed
LOC_Os03g04530Os.29745.1.S2_at1/113+2094285..2096105Cytochrome P450 family protein, expressed
LOC_Os03g04540OsAffx.24963.1.S1_at11/113+2096791..2097138hypothetical protein
LOC_Os03g04550Os.5899.1.S1_at11/113+2102803..2104757expressed protein
LOC_Os03g04560OsAffx.24964.4.S1_x_at11/113+2105102..2108575hypothetical protein
LOC_Os03g04560OsAffx.24964.3.S1_x_at1/113+2105102..2108575hypothetical protein
LOC_Os03g04560OsAffx.24964.2.S1_x_at1/113+2105102..2108575hypothetical protein
LOC_Os03g04570Os.17182.1.S1_at11/113+2111087..2115836POT family protein, expressed
LOC_Os03g04570Os.46546.2.S1_x_at1/113+2111087..2115836POT family protein, expressed
LOC_Os03g04580Os.48474.1.S1_at11/113+2119027..2120225expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18623.1.S1_at--485--2191Chr03:2095588..2095612 (25 bp)
ACAACATCCTGATACCGGTGTACTC
LOC_Os03g04530
Os.18623.1.S1_at--822--8391Chr03:2095706..2095730 (25 bp)
GGCGCACAGGTTCATGCCGTTCAAC
LOC_Os03g04530
Os.18623.1.S1_at--314--3791Chr03:2095749..2095773 (25 bp)
CTCGGGAAGGACATCTCGGTGCTGC
LOC_Os03g04530
Os.18623.1.S1_at--171--7551Chr03:2095797..2095821 (25 bp)
GTGGCCTGGAACTTCGACCTCGAGG
LOC_Os03g04530
Os.18623.1.S1_at--1012--5871Chr03:2095842..2095866 (25 bp)
GAGCCCAAGGTGTCGATCGTGATGC
LOC_Os03g04530
Os.18623.1.S1_at--892--3991Chr03:2095914..2095938 (25 bp)
CGTGTGCCAATTAACCCATCGGTGA
LOC_Os03g04530
Os.18623.1.S1_at--145--3351Chr03:2095961..2095985 (25 bp)
CACGGGCATGTACGGTTTTCACTAT
LOC_Os03g04530
Os.18623.1.S1_at--353--6811Chr03:2095975..2095999 (25 bp)
GTTTTCACTATGCATGGCCTACGTA
LOC_Os03g04530
Os.18623.1.S1_at--828--9931Chr03:2095994..2096018 (25 bp)
TACGTATCTCTATCACCGTGTTGTA
LOC_Os03g04530
Os.18623.1.S1_at--942--7171Chr03:2096030..2096054 (25 bp)
GTCTGTTCGATTTCACCAGGCGAGA
LOC_Os03g04530
Os.18623.1.S1_at--1158--4851Chr03:2096067..2096091 (25 bp)
GCTAGTTCTCACGTGTGTTCCATAA
LOC_Os03g04530
Target Sequence 
ACAACATCCTGATACCGGTGTACTCCATGGGCAGGATGGCGAGCGTGTGGGGGAAGGACAGCGGCGAGTACAGGCCGGAG
CGGTGGGTGACGGAGGACGGCAAACTGCGGCACGTGCCGGCGCACAGGTTCATGCCGTTCAACGCCGGGCCNGAGGCTNT
NCCTCGGGAAGGACATCTCGGTGCTGCNAGATGAAGAGCGTCGCCGCCGCCGTGGCCTGGAACTTCGACCTCGAGGTGGT
GGCCGGCCACGCCGTGGAGCCCAAGGTGTCGATCGTGATGCAGATCAAGAACGGCCTCATGGTGAAGGTGAAGAAGCGGT
AGATCGACCGTGTGCCAATTAACCCATCGGTGAAAACATATCGTACGTGTTTGTACACGGGCATGTACGGTTTTCACTAT
GCATGGCCTACGTATCTCTATCACCGTGTTGTAAAATGTAAACGGTCTGTTCGATTTCACCAGGCGAGACCCTCTCTGTA
CGCTAGTTCTCACGTGTGTTCCATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18623.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis