Browse Element(s) Details


Os.47965.1.A1_at

Description gb:AK064723.1
DB_XREF= gi:32974741
TID=Os.47965.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.47965 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-118-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-F09, full insert sequence.
FL= gb:AK064723.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0449011/11Cyclin-dependent kinase inhibitor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04450Os.49230.1.S1_at11/113+2044160..2046848expressed protein
LOC_Os03g04460Os.5553.1.S1_at11/113+2048569..2052341Eukaryotic porin family protein, expressed
LOC_Os03g04460Os.55320.1.S1_at11/113+2048569..2052341Eukaryotic porin family protein, expressed
LOC_Os03g04470OsAffx.3129.1.S1_x_at11/113+2052531..2054102expressed protein
LOC_Os03g04470Os.10426.1.S1_at10/113+2052531..2054102expressed protein
LOC_Os03g04480Os.52832.1.S1_at11/113+2054433..2056747CorA-like Mg2+ transporter protein, expressed
LOC_Os03g04490Os.47965.1.A1_at11/113+2067784..2070814Cyclin-dependent kinase inhibitor family protein, expressed
LOC_Os03g04494NANA3+2076561..2076858NA
LOC_Os03g04500Os.52933.1.S1_at11/113+2076715..2081114TPR Domain containing protein, expressed
LOC_Os03g04520Os.9132.1.A1_at11/113+2082423..2091256RNA recognition motif family protein, expressed
LOC_Os03g04530Os.18623.1.S1_at11/113+2094285..2096105Cytochrome P450 family protein, expressed
LOC_Os03g04530Os.29745.1.S2_at1/113+2094285..2096105Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045736biological_processnegative regulation of cyclin dependent protein kinase activity
GO:0045786biological_processnegative regulation of progression through cell cycle
GO:0004861molecular_functioncyclin-dependent protein kinase inhibitor activity
GO:0030332molecular_functioncyclin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47965.1.A1_at--312--2911Chr03:2070166..2070190 (25 bp)
AATGGAGACCTCTGTTTGTCGTTAC
LOC_Os03g04490
Os.47965.1.A1_at--1023--6771Chr03:2070186..2070210 (25 bp)
GTTACGTTCCGAGTTCTCTTGAGAT
LOC_Os03g04490
Os.47965.1.A1_at--807--8191Chr03:2070211..2070235 (25 bp)
GGAAGAGTTCTTTGCAGCTGCTGAA
LOC_Os03g04490
Os.47965.1.A1_at--923--7851Chr03:2070403..2070427 (25 bp)
GGTATAACTTCTGTCCTGTGAACGA
LOC_Os03g04490
Os.47965.1.A1_at--1115--4031Chr03:2070549..2070573 (25 bp)
CGATTAGGTTTCTTCTCTGTTGTAA
LOC_Os03g04490
Os.47965.1.A1_at--384--8811Chr03:2070629..2070653 (25 bp)
TGTTGAGTTACACATCCTGATCCCC
LOC_Os03g04490
Os.47965.1.A1_at--1126--10531Chr03:2070682..2070706 (25 bp)
TTCTGTAACGAACCACCTCTTTTAG
LOC_Os03g04490
Os.47965.1.A1_at--622--10091Chr03:2070704..2070728 (25 bp)
TAGGCCTAGCTTTATTATCTGTCCC
LOC_Os03g04490
Os.47965.1.A1_at--992--431Chr03:2070720..2070744 (25 bp)
ATCTGTCCCCAGTCGATTTAATGAA
LOC_Os03g04490
Os.47965.1.A1_at--256--10031Chr03:2070751..2070775 (25 bp)
TAGAATTTCTCTAGCAGCTGCCTTC
LOC_Os03g04490
Os.47965.1.A1_at--373--9191Chr03:2070769..2070793 (25 bp)
TGCCTTCTGTTTACCCACTGAAGAT
LOC_Os03g04490
Target Sequence 
AATGGAGACCTCTGTTTGTCGTTACGTTCCGAGTTCTCTTGAGATGGAAGAGTTCTTTGCAGCTGCTGAACAACAGCAAC
ATCAGGCTTTCAGAGAGAGGTATAACTTCTGTCCTGTGAACGACTGCCCACTTCCTGGACGGTACGAATGGACAAGGCTA
GACTGCTAGATTTTCATCTTGAGAGCTCCATTGATCTCTCCACACAGTTGACTAGCACCACCATGGCAGAGNCAAAATGC
AATTCGATTAGGTTTCTTCTCTGTTGTAAAAAAAAAATAGAGTTAGTCAGTAGCTCAATGATCTTGTGTAACAAACATAA
GTGATGTTGAGTTACACATCCTGATCCCCCCACCAACATGTAACCGTTAACTGCTCATTCTGTAACGAACCACCTCTTTT
AGGCCTAGCTTTATTATCTGTCCCCAGTCGATTTAATGAATTTAGTTAGAATTTCTCTAGCAGCTGCCTTCTGTTTACCC
ACTGAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47965.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis