Browse Element(s) Details


OsAffx.3129.1.S1_x_at

Description tigr:9631.m00358
TID=OsAffx.3129.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Eukaryotic porin, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0447011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04430Os.14914.1.S1_at11/113+2034567..2038086protein phosphatase 2C homolog, putative, expressed
LOC_Os03g04440Os.6973.1.S1_at11/113+2038421..2042351expressed protein
LOC_Os03g04450Os.49230.1.S1_at11/113+2044160..2046848expressed protein
LOC_Os03g04460Os.5553.1.S1_at11/113+2048569..2052341Eukaryotic porin family protein, expressed
LOC_Os03g04460Os.55320.1.S1_at11/113+2048569..2052341Eukaryotic porin family protein, expressed
LOC_Os03g04470OsAffx.3129.1.S1_x_at11/113+2052531..2054102expressed protein
LOC_Os03g04470Os.10426.1.S1_at10/113+2052531..2054102expressed protein
LOC_Os03g04480Os.52832.1.S1_at11/113+2054433..2056747CorA-like Mg2+ transporter protein, expressed
LOC_Os03g04490Os.47965.1.A1_at11/113+2067784..2070814Cyclin-dependent kinase inhibitor family protein, expressed
LOC_Os03g04494NANA3+2076561..2076858NA
LOC_Os03g04500Os.52933.1.S1_at11/113+2076715..2081114TPR Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3129.1.S1_x_at--1078--7311Chr03:2053162..2053186 (25 bp)
GTGCTCTTTGCAATGGGTGGCTACG
LOC_Os03g04470
OsAffx.3129.1.S1_x_at--966--7411Chr03:2053178..2053202 (25 bp)
GTGGCTACGGAACATACCTGGGCTT
LOC_Os03g04470
OsAffx.3129.1.S1_x_at--762--7951Chr03:2053205..2053228 (24 bp)
GGATCAAGCTATCGGATGACCCTGA
LOC_Os03g04470
OsAffx.3129.1.S1_x_at--828--731Chr03:2053360..2053384 (25 bp)
ATGTTCTTCTTCTTCGCAGCTGGCG
LOC_Os03g04470
OsAffx.3129.1.S1_x_at--1011--4811Chr03:2053402..2053426 (25 bp)
GCTCTTCTCACGTCAGACAAACCAA
LOC_Os03g04470
OsAffx.3129.1.S1_x_at--56--451Chr03:2053426..2053577 (25 bp)
ATCTTTGAGAGTCCGCATGCTGTGA
LOC_Os03g04470
OsAffx.3129.1.S1_x_at--371--10731Chr03:2053593..2053617 (25 bp)
TTGCACTCCTTACCATTCAGTCTAT
LOC_Os03g04470
OsAffx.3129.1.S1_x_at--387--10151Chr03:2053615..2053637 (23 bp)
TATCCTGCCGACATTGTTCGAGGGT
LOC_Os03g04470
OsAffx.3129.1.S1_x_at--683--6711Chr03:2053630..2053758 (25 bp)
GTTCGAGGGTAATCCTTCGCTGAGA
LOC_Os03g04470
OsAffx.3129.1.S1_x_at--286--5591Chr03:2053757..2053781 (25 bp)
GAAATGCACATGGACTCCTCGGCAG
LOC_Os03g04470
OsAffx.3129.1.S1_x_at--900--4691Chr03:2053781..2053805 (25 bp)
GCGGCATCATGACCCTGTTTCTAAT
LOC_Os03g04470
Target Sequence 
GTGCTCTTTGCAATGGGTGGCTACGGAACATACCTGGGCTTCAGGATCAAGCTATCGGATGACCCTGAAGAGAAGGCCAA
GGCCAAGGACCTCCACCCGAAGCTCCTCGCCGGCATGTTCTTCTTCTTCGCAGCTGGCGCCACTGGTGGAGTCACCGCTC
TTCTCACGTCAGACAAACCAATCTTTGAGAGTCCGCATGCTGTGACCGGCATCATCGGCCTTGCACTCCTTACCATTCAG
TCTATCCTGCCGACATTGTTCGAGGGTAATCCTTCGCTGAGAAATGCACATGGACTCCTCGGCAGCGGCATCATGACCCT
GTTTCTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3129.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis