Browse Element(s) Details


Os.52832.1.S1_at

Description gb:AK069498.1
DB_XREF= gi:32979522
TID=Os.52832.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52832 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023022F21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023022F21, full insert sequence.
FL= gb:AK069498.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0448011/11CorA-like Mg2+ transporter protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04430Os.14914.1.S1_at11/113+2034567..2038086protein phosphatase 2C homolog, putative, expressed
LOC_Os03g04440Os.6973.1.S1_at11/113+2038421..2042351expressed protein
LOC_Os03g04450Os.49230.1.S1_at11/113+2044160..2046848expressed protein
LOC_Os03g04460Os.5553.1.S1_at11/113+2048569..2052341Eukaryotic porin family protein, expressed
LOC_Os03g04460Os.55320.1.S1_at11/113+2048569..2052341Eukaryotic porin family protein, expressed
LOC_Os03g04470OsAffx.3129.1.S1_x_at11/113+2052531..2054102expressed protein
LOC_Os03g04470Os.10426.1.S1_at10/113+2052531..2054102expressed protein
LOC_Os03g04480Os.52832.1.S1_at11/113+2054433..2056747CorA-like Mg2+ transporter protein, expressed
LOC_Os03g04490Os.47965.1.A1_at11/113+2067784..2070814Cyclin-dependent kinase inhibitor family protein, expressed
LOC_Os03g04494NANA3+2076561..2076858NA
LOC_Os03g04500Os.52933.1.S1_at11/113+2076715..2081114TPR Domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0030001biological_processmetal ion transport
GO:0016020cellular_componentmembrane
GO:0046873molecular_functionmetal ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52832.1.S1_at--1122--2451Chr03:2054953..2055100 (25 bp)
AACAGAATTTTCTTGGTTCGGCAGT
LOC_Os03g04480
Os.52832.1.S1_at--631--5271Chr03:2054879..2054903 (25 bp)
GAATGAACTCCTAGGGCTCCAGCTT
LOC_Os03g04480
Os.52832.1.S1_at--270--8851Chr03:2054850..2054874 (25 bp)
TGATCATCGCATCCTTTGGCATAGC
LOC_Os03g04480
Os.52832.1.S1_at--754--2471Chr03:2054821..2054845 (25 bp)
AACACCTTCATAGCTGCGGCTTTTG
LOC_Os03g04480
Os.52832.1.S1_at--153--3751Chr03:2054784..2054808 (25 bp)
CTCACCGTGGGTATCATTTCGTTAT
LOC_Os03g04480
Os.52832.1.S1_at--1090--9351Chr03:2054766..2054790 (25 bp)
TCGTTATTGGAGTACCCTTTGGACA
LOC_Os03g04480
Os.52832.1.S1_at--20--8151Chr03:2054746..2054770 (25 bp)
GGACAATTTGTTGGAGCCACCTCAT
LOC_Os03g04480
Os.52832.1.S1_at--777--8091Chr03:2054734..2054758 (25 bp)
GGAGCCACCTCATTTTTATGCATGT
LOC_Os03g04480
Os.52832.1.S1_at--1105--8691Chr03:2054712..2054736 (25 bp)
TGTCGATTGTCATACTGTTGTTCAC
LOC_Os03g04480
Os.52832.1.S1_at--912--2491Chr03:2054674..2054698 (25 bp)
AACAGGTTGCTCTGCACTTGAGCTA
LOC_Os03g04480
Os.52832.1.S1_at--1009--7971Chr03:2054581..2054605 (25 bp)
GGATGCCTTAGAATTCCTGTTCTAT
LOC_Os03g04480
Target Sequence 
AACAGAATTTTCTTGGTTCGGCAGTATATTGTTGACACAGAAGATTATATCAGCATCCAACTTGACAACAAACGGAATGA
ACTCCTAGGGCTCCAGCTTACCCTGATCATCGCATCCTTTGGCATAGCCATCAACACCTTCATAGCTGCGGCTTTTGCGA
TGAACATCCCTCACCGTGGGTATCATTTCGTTATTGGAGTACCCTTTGGACAATTTGTTGGAGCCACCTCATTTTTATGC
ATGTCGATTGTCATACTGTTGTTCACATATGCCTGGAGGAACAGGTTGCTCTGCACTTGAGCTAGCACAACCTCAGAGTA
ATCAACAAGAGCCTCACCTCTCACCTGTGACACTGATTAGTATTCTTCTTCAGGATGCCTTAGAATTCCTGTTCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52832.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis