Browse Element(s) Details


Os.5553.1.S1_at

Description gb:AK100231.1
DB_XREF= gi:32985440
TID=Os.5553.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5553 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023049J19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023049J19, full insert sequence.
FL= gb:AK100231.1 gb:AK060148.1 gb:AK073584.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0446011/11Eukaryotic porin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04430Os.14914.1.S1_at11/113+2034567..2038086protein phosphatase 2C homolog, putative, expressed
LOC_Os03g04440Os.6973.1.S1_at11/113+2038421..2042351expressed protein
LOC_Os03g04450Os.49230.1.S1_at11/113+2044160..2046848expressed protein
LOC_Os03g04460Os.5553.1.S1_at11/113+2048569..2052341Eukaryotic porin family protein, expressed
LOC_Os03g04460Os.55320.1.S1_at11/113+2048569..2052341Eukaryotic porin family protein, expressed
LOC_Os03g04470OsAffx.3129.1.S1_x_at11/113+2052531..2054102expressed protein
LOC_Os03g04470Os.10426.1.S1_at10/113+2052531..2054102expressed protein
LOC_Os03g04480Os.52832.1.S1_at11/113+2054433..2056747CorA-like Mg2+ transporter protein, expressed
LOC_Os03g04490Os.47965.1.A1_at11/113+2067784..2070814Cyclin-dependent kinase inhibitor family protein, expressed
LOC_Os03g04494NANA3+2076561..2076858NA
LOC_Os03g04500Os.52933.1.S1_at11/113+2076715..2081114TPR Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006820biological_processanion transport
GO:0005739cellular_componentmitochondrion
GO:0005741cellular_componentmitochondrial outer membrane
GO:0008308molecular_functionvoltage-gated ion-selective channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5553.1.S1_at--338--6551Chr03:2051744..2051768 (25 bp)
GATTATCACCTCCTGTACAAGTGTT
LOC_Os03g04460
Os.5553.1.S1_at--438--1111Chr03:2051763..2051787 (25 bp)
AGTGTTAGATACTTCTTGCCCGTGT
LOC_Os03g04460
Os.5553.1.S1_at--414--7331Chr03:2051786..2051810 (25 bp)
GTGCATCCTAGCCATACTTACGAAA
LOC_Os03g04460
Os.5553.1.S1_at--683--10431Chr03:2051822..2051846 (25 bp)
TTATGCCCGTTTTGTAAGTGTCTTG
LOC_Os03g04460
Os.5553.1.S1_at--442--1891Chr03:2051856..2051880 (25 bp)
ACGTTGTTGTCTTGGAGTTGGTCTT
LOC_Os03g04460
Os.5553.1.S1_at--836--10031Chr03:2051880..2051904 (25 bp)
TAGTTTTGTGGAACCCTACCACCAG
LOC_Os03g04460
Os.5553.1.S1_at--329--1671Chr03:2051903..2051927 (25 bp)
AGCCGACTTCATCCCGAGAATTGAA
LOC_Os03g04460
Os.5553.1.S1_at--391--291Chr03:2051955..2051979 (25 bp)
ATAGATTTACTGTTTTGCTGCTTCA
LOC_Os03g04460
Os.5553.1.S1_at--507--4771Chr03:2051971..2051995 (25 bp)
GCTGCTTCAGAAACTATTCGGTGTC
LOC_Os03g04460
Os.5553.1.S1_at--1049--7271Chr03:2052051..2052075 (25 bp)
GTGCCACGTTGGTTTGTTGCTGAGC
LOC_Os03g04460
Os.5553.1.S1_at--777--2991Chr03:2052294..2052318 (25 bp)
AATGTTTTGTTCTGATGCTCATCAC
LOC_Os03g04460
Target Sequence 
GATTATCACCTCCTGTACAAGTGTTAGATACTTCTTGCCCGTGTGCATCCTAGCCATACTTACGAAAGCTCCACCATTTT
ATGCCCGTTTTGTAAGTGTCTTGGCCGAAGAAACGTTGTTGTCTTGGAGTTGGTCTTAGTTTTGTGGAACCCTACCACCA
GCCGACTTCATCCCGAGAATTGAAAATACAGAGAGTTTTGTACTGGAAACAATAGATTTACTGTTTTGCTGCTTCAGAAA
CTATTCGGTGTCGATTGTACACCNTTGAAGAGCCCCCCTTGAAGAAGAATATCAGGGTAAGTGACTAAGTGCCACGTTGG
TTTGTTGCTGAGCCAAATGGGAGTTGGAAATGATTCGATATCTGCATTATTCTGTGATGCAGTTTTGGTTGGCTTGTTGC
TGAGCCAAATGGGAGTTAGAAATGATTTGATATCTGTTTTTTTATNCAGTTTTGGCATGCTGATGTGNCCCTTTTTTTTC
AATTGTTTGCAGTGTACCATATGGTCATTTCAATTGTTTCAAGAGAGTACACTATTTAGACATTGTACTAACAATGTTTT
GTTCTGATGCTCATCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5553.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis