Browse Element(s) Details


OsAffx.24881.1.S1_at

Description tigr:9630.m05488
TID=OsAffx.24881.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5524010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55190Os.50902.1.S1_at10/112+33799150..33800616expressed protein
LOC_Os02g55200Os.32481.1.S1_s_at11/112+33801145..33809546expressed protein
LOC_Os02g55200Os.10314.1.S1_a_at11/112+33801145..33809546expressed protein
LOC_Os02g55200Os.32481.2.S1_x_at6/112+33801145..33809546expressed protein
LOC_Os02g55200Os.32481.1.S1_at5/112+33801145..33809546expressed protein
LOC_Os02g55210OsAffx.24880.1.S1_at11/112+33809943..33812507carboxyl-terminal peptidase, putative, expressed
LOC_Os02g55220OsAffx.3077.1.S1_at11/112+33815753..33817887hypothetical protein
LOC_Os02g55230OsAffx.12651.1.S1_at11/112+33818582..33822379carboxyl-terminal peptidase, putative, expressed
LOC_Os02g55230OsAffx.3076.1.S1_s_at1/112+33818582..33822379carboxyl-terminal peptidase, putative, expressed
LOC_Os02g55240OsAffx.24881.1.S1_at10/112+33823002..33823853hypothetical protein
LOC_Os02g55250OsAffx.27510.1.S1_at11/112+33828040..33832179Helix-loop-helix DNA-binding domain containing protein
LOC_Os02g55260Os.24391.1.A1_at11/112+33832794..33837763DEAD/DEAH box helicase family protein, expressed
LOC_Os02g55270OsAffx.24882.1.S1_at11/112+33838016..33839278NLI interacting factor-like phosphatase family protein
LOC_Os02g55280OsAffx.12653.1.S1_at11/112+33840744..33841912NLI interacting factor-like phosphatase family protein
LOC_Os02g55290OsAffx.24964.5.S1_at11/112+33845428..33847925hypothetical protein
LOC_Os02g55290Os.21430.1.S1_at4/112+33845428..33847925hypothetical protein
LOC_Os02g55290OsAffx.24964.4.S1_x_at1/112+33845428..33847925hypothetical protein
LOC_Os02g55300Os.11760.1.S1_at11/112+33848294..33851178CCR4-NOT transcription complex subunit 7, putative, expressed
LOC_Os02g55300Os.11760.1.S2_at10/112+33848294..33851178CCR4-NOT transcription complex subunit 7, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24881.1.S1_at--994--2771Chr02:33823765..33823789 (25 bp)
AAGAGCTCAAATACATAAACAATGG
LOC_Os02g55240
OsAffx.24881.1.S1_at--848--5511Chr02:33823739..33823763 (25 bp)
GAAAACTCTAGTCAAATCCTCGTAG
LOC_Os02g55240
OsAffx.24881.1.S1_at--225--1971Chr02:33823735..33823759 (25 bp)
ACTCTAGTCAAATCCTCGTAGGCCA
LOC_Os02g55240
OsAffx.24881.1.S1_at--54--7091Chr02:33823729..33823753 (25 bp)
GTCAAATCCTCGTAGGCCAACAAGT
LOC_Os02g55240
OsAffx.24881.1.S1_at--1073--4391Chr02:33823714..33823738 (25 bp)
GCCAACAAGTTAATAGGGCTATTCA
LOC_Os02g55240
OsAffx.24881.1.S1_at--103--291NONE
ATAGGGCTATTCAGGGAGCCATCGA
NONE
OsAffx.24881.1.S1_at--683--10211Chr02:33823158..33823424 (25 bp)
TATTCAGGGAGCCATCGACGATGAC
LOC_Os02g55240
OsAffx.24881.1.S1_at--127--531Chr02:33823145..33823169 (25 bp)
ATCGACGATGACCTCAAGCCCATTG
LOC_Os02g55240
OsAffx.24881.1.S1_at--678--9691Chr02:33823105..33823129 (25 bp)
TCACACTCACGGTGGTTCACGCTCG
LOC_Os02g55240
OsAffx.24881.1.S1_at--243--1551Chr02:33823037..33823061 (25 bp)
AGCATTCTCCTGATAGCCGCTGGTG
LOC_Os02g55240
OsAffx.24881.1.S1_at--795--111Chr02:33823034..33823058 (25 bp)
ATTCTCCTGATAGCCGCTGGTGATG
LOC_Os02g55240
Target Sequence 
AAGAGCTCAAATACATAAACAATGGAGAAAACTCTAGTCAAATCCTCGTAGGCCAACAAGTTAATAGGGCTATTCAGGGA
GCCATCGACGATGACCTCAAGCCCATTGCCGCCGCTGCCGTCATCACACTCACGGTGGTTCACGCTCGCAACCTCACCAG
TTGCCGCCGGTGTTCATCCAGGCCTTCCGCCAGCATTCTCCTGATAGCCGCTGGTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24881.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis