Browse Element(s) Details


Os.50902.1.S1_at

Description gb:AK059349.1
DB_XREF= gi:32969367
TID=Os.50902.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50902 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-026-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-026-C08, full insert sequence.
FL= gb:AK059349.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5519010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55140Os.5433.1.S1_at11/112+33773392..33776827Cytosol aminopeptidase, putative, expressed
LOC_Os02g55150OsAffx.24878.1.S1_at11/112+33780355..33785071formin homology 2 domain-containing protein, putative, expressed
LOC_Os02g55160OsAffx.12650.1.S1_at11/112+33785317..33786760expressed protein
LOC_Os02g55170OsAffx.24879.1.S1_at11/112+33787265..33788936formin homology 2 domain-containing protein, putative
LOC_Os02g55180Os.24797.1.A1_at11/112+33791497..33797992Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os02g55190Os.50902.1.S1_at10/112+33799150..33800616expressed protein
LOC_Os02g55200Os.32481.1.S1_s_at11/112+33801145..33809546expressed protein
LOC_Os02g55200Os.10314.1.S1_a_at11/112+33801145..33809546expressed protein
LOC_Os02g55200Os.32481.2.S1_x_at6/112+33801145..33809546expressed protein
LOC_Os02g55200Os.32481.1.S1_at5/112+33801145..33809546expressed protein
LOC_Os02g55210OsAffx.24880.1.S1_at11/112+33809943..33812507carboxyl-terminal peptidase, putative, expressed
LOC_Os02g55220OsAffx.3077.1.S1_at11/112+33815753..33817887hypothetical protein
LOC_Os02g55230OsAffx.12651.1.S1_at11/112+33818582..33822379carboxyl-terminal peptidase, putative, expressed
LOC_Os02g55230OsAffx.3076.1.S1_s_at1/112+33818582..33822379carboxyl-terminal peptidase, putative, expressed
LOC_Os02g55240OsAffx.24881.1.S1_at10/112+33823002..33823853hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50902.1.S1_at--450--4211Chr02:33799947..33799971 (25 bp)
CCGCCGTTCCAATGGACCAGATGGA
LOC_Os02g55190
Os.50902.1.S1_at--834--5891Chr02:33799988..33800012 (25 bp)
GAGCTGACGCTCCTGCAATGCGCGA
LOC_Os02g55190
Os.50902.1.S1_at--377--9411NONE
TCGTCGGGATCGTCAACTCGAGATC
NONE
Os.50902.1.S1_at--896--671Chr02:33800182..33800206 (25 bp)
ATGACACGGACGGTGCTGACGACGA
LOC_Os02g55190
Os.50902.1.S1_at--698--10691Chr02:33800378..33800402 (25 bp)
TTGCTGGTGGCGCAACACCGCCAAG
LOC_Os02g55190
Os.50902.1.S1_at--950--5711Chr02:33800424..33800448 (25 bp)
GACTCCCGCCTCAGATAGCAAGAAT
LOC_Os02g55190
Os.50902.1.S1_at--976--10011Chr02:33800439..33800463 (25 bp)
TAGCAAGAATTAATCCGCCATGAGA
LOC_Os02g55190
Os.50902.1.S1_at--1048--6451Chr02:33800483..33800507 (25 bp)
GATCAAGATCGATCATCTCGCCTCG
LOC_Os02g55190
Os.50902.1.S1_at--249--4471Chr02:33800502..33800526 (25 bp)
GCCTCGCAGTGATCCGTTTTGTACT
LOC_Os02g55190
Os.50902.1.S1_at--204--10411Chr02:33800518..33800542 (25 bp)
TTTTGTACTCTGGTGATCATGCTGC
LOC_Os02g55190
Os.50902.1.S1_at--1107--31Chr02:33800582..33800606 (25 bp)
ATTGCATAAACTAACTGGGATCACA
LOC_Os02g55190
Target Sequence 
CCGCCGTTCCAATGGACCAGATGGAAGCGGAGCTCGAGGCGGAGCTGACGCTCCTGCAATGCGCGACTCCTCGTCGGGAT
CGTCAACTCGAGATCGGCGACGACGAGGAGGAGTCCACGGACACCCACGCGGCCACCTTCGCCGACGCCGACGATGACAC
GGACGGTGCTGACGACGAGGAGGAGGAGGAGGAGGAGAGCGGGGCGGCGGCGCAGGGCGGCGTGTCGGCGAGGGAGCTGG
AGAGGAGGCTGCACGAGCTGCTCCAGTGGCGGCACGAGGAGCGGATCGCGGAGCTGGAGACGGCGCTGGAGCGCGCCAGG
AAGAGGCTGCAGGAGAAGGAGCGCGAGGTTTGCTGGTGGCGCAACACCGCCAAGCTCGTCACCCGCCACAAGGACGACTC
CCGCCTCAGATAGCAAGAATTAATCCGCCATGAGATGAGATCAAACAAGAACAAGATCAAGATCGATCATCTCGCCTCGC
AGTGATCCGTTTTGTACTCTGGTGATCATGCTGCAACTAGACTAGAAGAACAAATTCCAACCAGAAAACATTGATTGCAT
AAACTAACTGGGATCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50902.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis