Browse Element(s) Details


Os.24797.1.A1_at

Description gb:AK120097.1
DB_XREF= gi:37989720
TID=Os.24797.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24797 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013022C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013022C03, full insert sequence.
FL= gb:AK120097.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5518011/11Ubiquitin carboxyl-terminal hydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55130Os.10548.2.S1_at11/112+33763429..33770197Serine carboxypeptidase II precursor, putative, expressed
LOC_Os02g55130Os.10548.1.S1_s_at11/112+33763429..33770197Serine carboxypeptidase II precursor, putative, expressed
LOC_Os02g55140Os.5433.1.S1_at11/112+33773392..33776827Cytosol aminopeptidase, putative, expressed
LOC_Os02g55150OsAffx.24878.1.S1_at11/112+33780355..33785071formin homology 2 domain-containing protein, putative, expressed
LOC_Os02g55160OsAffx.12650.1.S1_at11/112+33785317..33786760expressed protein
LOC_Os02g55170OsAffx.24879.1.S1_at11/112+33787265..33788936formin homology 2 domain-containing protein, putative
LOC_Os02g55180Os.24797.1.A1_at11/112+33791497..33797992Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os02g55190Os.50902.1.S1_at10/112+33799150..33800616expressed protein
LOC_Os02g55200Os.32481.1.S1_s_at11/112+33801145..33809546expressed protein
LOC_Os02g55200Os.10314.1.S1_a_at11/112+33801145..33809546expressed protein
LOC_Os02g55200Os.32481.2.S1_x_at6/112+33801145..33809546expressed protein
LOC_Os02g55200Os.32481.1.S1_at5/112+33801145..33809546expressed protein
LOC_Os02g55210OsAffx.24880.1.S1_at11/112+33809943..33812507carboxyl-terminal peptidase, putative, expressed
LOC_Os02g55220OsAffx.3077.1.S1_at11/112+33815753..33817887hypothetical protein
LOC_Os02g55230OsAffx.12651.1.S1_at11/112+33818582..33822379carboxyl-terminal peptidase, putative, expressed
LOC_Os02g55230OsAffx.3076.1.S1_s_at1/112+33818582..33822379carboxyl-terminal peptidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004197molecular_functioncysteine-type endopeptidase activity
GO:0004221molecular_functionubiquitin thiolesterase activity
GO:0004843molecular_functionubiquitin-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24797.1.A1_at--452--2711Chr02:33797508..33797532 (25 bp)
AAGCATGGCTTCAGTGGGCCGAACC
LOC_Os02g55180
Os.24797.1.A1_at--15--8651Chr02:33797600..33797624 (25 bp)
TGGGAACCAGCCTCTCAGGATATAA
LOC_Os02g55180
Os.24797.1.A1_at--942--5931Chr02:33797636..33797660 (25 bp)
GAGCAGCAACCTGTTGTTGTATCCT
LOC_Os02g55180
Os.24797.1.A1_at--1121--10051Chr02:33797688..33797712 (25 bp)
TAGTAGAACTATTATCCTCCCCATG
LOC_Os02g55180
Os.24797.1.A1_at--1014--6531Chr02:33797752..33797776 (25 bp)
GATTTAGGCCTCATGGCTCAGTCAT
LOC_Os02g55180
Os.24797.1.A1_at--18--10831Chr02:33797777..33797801 (25 bp)
TTGTCTGATTGATTAGCCGAGGAAC
LOC_Os02g55180
Os.24797.1.A1_at--576--8811Chr02:33797818..33797842 (25 bp)
TGTTGTCCCATTTCTGTCGAGCTTA
LOC_Os02g55180
Os.24797.1.A1_at--1016--7211Chr02:33797833..33797857 (25 bp)
GTCGAGCTTATCATGCCAATTTTTT
LOC_Os02g55180
Os.24797.1.A1_at--932--4931Chr02:33797869..33797893 (25 bp)
GCATTCACACGTGTTATTCATCCCG
LOC_Os02g55180
Os.24797.1.A1_at--106--7791Chr02:33797893..33797917 (25 bp)
GGTCCATTCGCACAATAACCGAGCA
LOC_Os02g55180
Os.24797.1.A1_at--512--6411Chr02:33797937..33797961 (25 bp)
GATCTGTGACTTGTATTCTGCATCA
LOC_Os02g55180
Target Sequence 
AAGCATGGCTTCAGTGGGCCGAACCCTTTCCAGGAGACGGCCAACATCAGATCACGGCAGAGGATGAGACTACAGTCTGA
CCAGACCAAATCTGGGAACCAGCCTCTCAGGATATAATTGNTATACTGGAGCAGCAACCTGTTGTTGTATCCTTCAGTTT
TGGAACAGTAACTACTTCTCTAGTAGAACTATTATCCTCCCCATGTTTTTTTTTTCAGTTATGTGTAGTGTCATCAGAGA
GTAAGATTTAGGCCTCATGGCTCAGTCATTTGTCTGATTGATTAGCCGAGGAACGAAGGGGACTCTTGTTTGTTGTCCCA
TTTCTGTCGAGCTTATCATGCCAATTTTTTTTTACGTCAATGCATTCACACGTGTTATTCATCCCGGTCCATTCGCACAA
TAACCGAGCAATTAAAAGTCGTGATTTCTGATCTGTGACTTGTATTCTGCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24797.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis