Browse Element(s) Details


Os.5433.1.S1_at

Description gb:AK058513.1
DB_XREF= gi:32968531
TID=Os.5433.1
CNT=33
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.5433 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-208-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-016-G10, full insert sequence.
FL= gb:AK058513.1 gb:AK104150.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5514011/11Cytosol aminopeptidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55110Os.21370.1.S1_at11/112+33745993..33752342expressed protein
LOC_Os02g55110OsAffx.24876.1.S1_at11/112+33745993..33752342expressed protein
LOC_Os02g55120Os.27119.1.S1_at10/112+33753148..33756764Translation initiation factor IF-3, C-terminal domain containing protein, expressed
LOC_Os02g55130Os.10548.2.S1_at11/112+33763429..33770197Serine carboxypeptidase II precursor, putative, expressed
LOC_Os02g55130Os.10548.1.S1_s_at11/112+33763429..33770197Serine carboxypeptidase II precursor, putative, expressed
LOC_Os02g55140Os.5433.1.S1_at11/112+33773392..33776827Cytosol aminopeptidase, putative, expressed
LOC_Os02g55150OsAffx.24878.1.S1_at11/112+33780355..33785071formin homology 2 domain-containing protein, putative, expressed
LOC_Os02g55160OsAffx.12650.1.S1_at11/112+33785317..33786760expressed protein
LOC_Os02g55170OsAffx.24879.1.S1_at11/112+33787265..33788936formin homology 2 domain-containing protein, putative
LOC_Os02g55180Os.24797.1.A1_at11/112+33791497..33797992Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os02g55190Os.50902.1.S1_at10/112+33799150..33800616expressed protein
LOC_Os02g55200Os.32481.1.S1_s_at11/112+33801145..33809546expressed protein
LOC_Os02g55200Os.10314.1.S1_a_at11/112+33801145..33809546expressed protein
LOC_Os02g55200Os.32481.2.S1_x_at6/112+33801145..33809546expressed protein
LOC_Os02g55200Os.32481.1.S1_at5/112+33801145..33809546expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004177molecular_functionaminopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5433.1.S1_at--1028--1051Chr02:33774068..33774092 (25 bp)
AGGGTGGTTCTATTACTGCTGCACT
LOC_Os02g55140
Os.5433.1.S1_at--329--9111Chr02:33774055..33774076 (22 bp)
TGCTGCACTCTTCCTGAAACAGTTT
LOC_Os02g55140
Os.5433.1.S1_at--251--6331Chr02:33773881..33773905 (25 bp)
GATGCACATTGACATGGCCGGGCCA
LOC_Os02g55140
Os.5433.1.S1_at--564--4351Chr02:33773813..33773837 (25 bp)
CCACCCTGGTTGAGTGGGTTCTCAA
LOC_Os02g55140
Os.5433.1.S1_at--361--8231Chr02:33773703..33773727 (25 bp)
GGCAAAGCGGCCAGCTAGGGCCAAT
LOC_Os02g55140
Os.5433.1.S1_at--920--4991Chr02:33773644..33773668 (25 bp)
GAAAACTGGTCATCGTCGTTTCCTT
LOC_Os02g55140
Os.5433.1.S1_at--800--9691Chr02:33773564..33773588 (25 bp)
TCACAAGATGTTTTGGCCAGGACAA
LOC_Os02g55140
Os.5433.1.S1_at--1076--4411Chr02:33773549..33773573 (25 bp)
GCCAGGACAAGTCTGTTCGTGCCGT
LOC_Os02g55140
Os.5433.1.S1_at--598--7511Chr02:33773493..33773517 (25 bp)
GTGGAATAACGCTCTTCCTTTTGAT
LOC_Os02g55140
Os.5433.1.S1_at--841--10671Chr02:33773479..33773503 (25 bp)
TTCCTTTTGATTTGTGCCCCGGGAT
LOC_Os02g55140
Os.5433.1.S1_at--590--7291Chr02:33773466..33773490 (25 bp)
GTGCCCCGGGATAATCTGAGTCATA
LOC_Os02g55140
Target Sequence 
AGGGTGGTTCTATTACTGCTGCACTCTTCCTGAAACAGTTTGTGGATGAGAAGGTGCNAGTGGATGCACATTGACATGGC
CGGGCCAGTGTGGAACGACAAGAAGCGGGCGGCCACCGGATTCGGCGTCTCCACCCTGGTTGAGTGGGTTCTCAAGAACT
CATCTTAAATCATTTATTCCCTTGCATTCTCATCCCCCTGAGGATGAGATGACACGAGGATTTCGGNGGAGTTTGGTGGT
GGCAAAGCGGCCAGCTAGGGCCAATNATATACAAAAGTTTAGTGGGCAATTTAGAATAAGAAAACTGGTCATCGTCGTTT
CCTTTTCNAGTTGGGGTGTCGAATTGTTTGGTGAAATCATCATCATCATCATCATCACATTCACAAGATGTTTTGGCCAG
GACAAGTCTGTTCGTGCCGTNTAGCTCTCTCCCTTTTCTCTTTTGTCAAATGTGGAATAACGCTCTTCCTTTTGATTTGT
GCCCCGGGATAATCTGAGTCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5433.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis