Browse Element(s) Details


Os.21370.1.S1_at

Description gb:BQ908861
DB_XREF= gi:22307639
DB_XREF=T016C09
CLONE=T016C09
TID=Os.21370.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.21370 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_194800.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5511011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55060Os.12840.1.S1_at11/112+33721218..33721942Steroid binding protein 3, putative, expressed
LOC_Os02g55070OsAffx.24875.1.S1_at11/112+33723898..33727785hypothetical protein
LOC_Os02g55080Os.9439.1.S1_at11/112+33728531..33731460expressed protein
LOC_Os02g55090Os.15626.1.S1_at11/112+33732816..33736381expressed protein
LOC_Os02g55090Os.55228.1.S1_at11/112+33732816..33736381expressed protein
LOC_Os02g55100OsAffx.12649.1.S1_at10/112+33739123..33741024hypothetical protein
LOC_Os02g55110Os.21370.1.S1_at11/112+33745993..33752342expressed protein
LOC_Os02g55110OsAffx.24876.1.S1_at11/112+33745993..33752342expressed protein
LOC_Os02g55120Os.27119.1.S1_at10/112+33753148..33756764Translation initiation factor IF-3, C-terminal domain containing protein, expressed
LOC_Os02g55130Os.10548.2.S1_at11/112+33763429..33770197Serine carboxypeptidase II precursor, putative, expressed
LOC_Os02g55130Os.10548.1.S1_s_at11/112+33763429..33770197Serine carboxypeptidase II precursor, putative, expressed
LOC_Os02g55140Os.5433.1.S1_at11/112+33773392..33776827Cytosol aminopeptidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21370.1.S1_at--881--3851Chr02:33751982..33752006 (25 bp)
CTGAGTGAACAGCTTAATGCATGTA
LOC_Os02g55110
Os.21370.1.S1_at--909--6151Chr02:33752033..33752057 (25 bp)
GAGGTAACACCATTCATTAGTTTCA
LOC_Os02g55110
Os.21370.1.S1_at--226--4331Chr02:33752042..33752066 (25 bp)
CCATTCATTAGTTTCAGTAGCTGAC
LOC_Os02g55110
Os.21370.1.S1_at--307--1191Chr02:33752057..33752081 (25 bp)
AGTAGCTGACTGTGTATCTTCATGC
LOC_Os02g55110
Os.21370.1.S1_at--113--4971Chr02:33752201..33752225 (25 bp)
GCATCAACACGAAATCATGGATCAA
LOC_Os02g55110
Os.21370.1.S1_at--244--8571Chr02:33752218..33752242 (25 bp)
TGGATCAATCCATGGTGACGAGCCT
LOC_Os02g55110
Os.21370.1.S1_at--956--7751Chr02:33752231..33752255 (25 bp)
GGTGACGAGCCTGTCAATGTTTTAT
LOC_Os02g55110
Os.21370.1.S1_at--18--3211Chr02:33752245..33752269 (25 bp)
CAATGTTTTATTTATAGCGGCCTAC
LOC_Os02g55110
Os.21370.1.S1_at--113--1631Chr02:33752260..33752284 (25 bp)
AGCGGCCTACAAACTGAGGACGCCA
LOC_Os02g55110
Os.21370.1.S1_at--68--5811Chr02:33752278..33752302 (25 bp)
GACGCCAACGTCCTGAAACTGAAAA
LOC_Os02g55110
Os.21370.1.S1_at--447--3991Chr02:33752286..33752310 (25 bp)
CGTCCTGAAACTGAAAACTTGTTGT
LOC_Os02g55110
Target Sequence 
CTGAGTGAACAGCTTAATGCATGTATGTCTAACTAANNAGAATAGAATGTAGAGGTAACACCATTCATTAGTTTCAGTAG
CTGACTGTGTATCTTCATGCTCTCTCGCCCCACTTCCTATTCCTTTTTTTCCCTTTTCTAGTTANGGNGTTTNCCCATTT
CTTNTTTTGTACTTNCTGCATGCCCCTNTTTNTGTCTNTACAATTTACNTGGANNNNAAGTGCATCAACACGAAATCATG
GATCAATCCATGGTGACGAGCCTGTCAATGTTTTATTTATAGCGGCCTACAAACTGAGGACGCCAACGTCCTGAAACTGA
AAACTTGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21370.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis