Browse Element(s) Details


Os.12840.1.S1_at

Description gb:AK062552.1
DB_XREF= gi:32972570
TID=Os.12840.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12840 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023088H19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-H03, full insert sequence.
FL= gb:AK062552.1 gb:AK072423.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5506011/11Steroid binding protein 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55010Os.50477.1.S1_at11/112+33694546..33700463expressed protein
LOC_Os02g55010Os.4222.1.S1_at1/112+33694546..33700463expressed protein
LOC_Os02g55020Os.53988.1.S1_at10/112+33700647..33702979expressed protein
LOC_Os02g55030Os.7748.1.S1_at11/112+33704084..33713617hydrolase, NUDIX family protein, expressed
LOC_Os02g55040Os.56312.1.S1_at11/112+33714548..33715975expressed protein
LOC_Os02g55040OsAffx.24873.1.S1_x_at11/112+33714548..33715975expressed protein
LOC_Os02g55050OsAffx.24874.1.S1_at10/112+33716414..33718795F-box domain containing protein, expressed
LOC_Os02g55060Os.12840.1.S1_at11/112+33721218..33721942Steroid binding protein 3, putative, expressed
LOC_Os02g55070OsAffx.24875.1.S1_at11/112+33723898..33727785hypothetical protein
LOC_Os02g55080Os.9439.1.S1_at11/112+33728531..33731460expressed protein
LOC_Os02g55090Os.15626.1.S1_at11/112+33732816..33736381expressed protein
LOC_Os02g55090Os.55228.1.S1_at11/112+33732816..33736381expressed protein
LOC_Os02g55100OsAffx.12649.1.S1_at10/112+33739123..33741024hypothetical protein
LOC_Os02g55110Os.21370.1.S1_at11/112+33745993..33752342expressed protein
LOC_Os02g55110OsAffx.24876.1.S1_at11/112+33745993..33752342expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0030308biological_processnegative regulation of cell growth
GO:0005886cellular_componentplasma membrane
GO:0005496molecular_functionsteroid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12840.1.S1_at--390--6551Chr02:33721633..33721657 (25 bp)
GATTATTGTATCCTCTTGTGCTCTA
LOC_Os02g55060
Os.12840.1.S1_at--1159--3751Chr02:33721653..33721677 (25 bp)
CTCTACAGCTTAATTCCATCCGTAA
LOC_Os02g55060
Os.12840.1.S1_at--785--10191Chr02:33721692..33721716 (25 bp)
TATTATTACTTCTCCCTGTGTGTCA
LOC_Os02g55060
Os.12840.1.S1_at--407--1111Chr02:33721716..33721740 (25 bp)
AGTGTGTCTGTGCTTGCAGCTTTGC
LOC_Os02g55060
Os.12840.1.S1_at--165--10291Chr02:33721736..33721760 (25 bp)
TTTGCTCTCTGGTTGCTTGATTAGC
LOC_Os02g55060
Os.12840.1.S1_at--730--6871Chr02:33721804..33721828 (25 bp)
GTATTGGATTGTCTGGTCTTTCTTT
LOC_Os02g55060
Os.12840.1.S1_at--914--3651Chr02:33721821..33721845 (25 bp)
CTTTCTTTTTTGTGATTGCCGCTTG
LOC_Os02g55060
Os.12840.1.S1_at--606--9171Chr02:33721837..33721861 (25 bp)
TGCCGCTTGATTTCTTGTGCCATAG
LOC_Os02g55060
Os.12840.1.S1_at--1021--7271Chr02:33721853..33721877 (25 bp)
GTGCCATAGGTTGTTCTTAATCTTG
LOC_Os02g55060
Os.12840.1.S1_at--738--431Chr02:33721872..33721896 (25 bp)
ATCTTGATCTGGGTATTCTTGTATA
LOC_Os02g55060
Os.12840.1.S1_at--877--4751Chr02:33721910..33721934 (25 bp)
GCTGAATGCCTTGACCACAGAAATT
LOC_Os02g55060
Target Sequence 
GATTATTGTATCCTCTTGTGCTCTACAGCTTAATTCCATCCGTAATTCCATGTGTAACTTATTATTACTTCTCCCTGTGT
GTCAGTGTGTCTGTGCTTGCAGCTTTGCTCTCTGGTTGCTTGATTAGCTGCCCAATAATCTGAACAATAAGAAATCTGGG
GAGTAATTTAAGTATTGGATTGTCTGGTCTTTCTTTTTTGTGATTGCCGCTTGATTTCTTGTGCCATAGGTTGTTCTTAA
TCTTGATCTGGGTATTCTTGTATAGAAGAAGCAATGTGCTGAATGCCTTGACCACAGAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12840.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis