Browse Element(s) Details


Os.7748.1.S1_at

Description gb:AK072317.1
DB_XREF= gi:32982340
TID=Os.7748.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7748 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023026G15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023026G15, full insert sequence.
FL= gb:AK072317.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5503011/11hydrolase, NUDIX family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54980Os.26549.1.S1_at11/112+33682481..33684617Rieske domain containing protein, expressed
LOC_Os02g54990Os.37836.1.S1_at11/112+33684922..33688265TMS membrane family protein, putative, expressed
LOC_Os02g55000Os.15421.1.S1_at11/112+33688852..33692692G-patch domain containing protein, expressed
LOC_Os02g55000Os.15421.1.S1_x_at11/112+33688852..33692692G-patch domain containing protein, expressed
LOC_Os02g55000Os.15421.2.S1_at9/112+33688852..33692692G-patch domain containing protein, expressed
LOC_Os02g55010Os.50477.1.S1_at11/112+33694546..33700463expressed protein
LOC_Os02g55010Os.4222.1.S1_at1/112+33694546..33700463expressed protein
LOC_Os02g55020Os.53988.1.S1_at10/112+33700647..33702979expressed protein
LOC_Os02g55030Os.7748.1.S1_at11/112+33704084..33713617hydrolase, NUDIX family protein, expressed
LOC_Os02g55040Os.56312.1.S1_at11/112+33714548..33715975expressed protein
LOC_Os02g55040OsAffx.24873.1.S1_x_at11/112+33714548..33715975expressed protein
LOC_Os02g55050OsAffx.24874.1.S1_at10/112+33716414..33718795F-box domain containing protein, expressed
LOC_Os02g55060Os.12840.1.S1_at11/112+33721218..33721942Steroid binding protein 3, putative, expressed
LOC_Os02g55070OsAffx.24875.1.S1_at11/112+33723898..33727785hypothetical protein
LOC_Os02g55080Os.9439.1.S1_at11/112+33728531..33731460expressed protein
LOC_Os02g55090Os.15626.1.S1_at11/112+33732816..33736381expressed protein
LOC_Os02g55090Os.55228.1.S1_at11/112+33732816..33736381expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7748.1.S1_at--1032--5131Chr02:33713300..33713324 (25 bp)
GCAAACGATCAGTAGGGTGCTCGGT
LOC_Os02g55030
Os.7748.1.S1_at--509--7711Chr02:33713314..33713338 (25 bp)
GGGTGCTCGGTTTAGCAAGCTACGT
LOC_Os02g55030
Os.7748.1.S1_at--1138--2691Chr02:33713330..33713354 (25 bp)
AAGCTACGTGCTTCAGTGGAACTCT
LOC_Os02g55030
Os.7748.1.S1_at--675--7511Chr02:33713345..33713369 (25 bp)
GTGGAACTCTGCAAGAAAACGTATT
LOC_Os02g55030
Os.7748.1.S1_at--599--10791Chr02:33713370..33713394 (25 bp)
TTGTTCGATCCTAAGATACTCCATG
LOC_Os02g55030
Os.7748.1.S1_at--636--6371Chr02:33713376..33713400 (25 bp)
GATCCTAAGATACTCCATGACAAGA
LOC_Os02g55030
Os.7748.1.S1_at--146--171Chr02:33713473..33713497 (25 bp)
ATTTATTACGTCTTTGATTGCGAGA
LOC_Os02g55030
Os.7748.1.S1_at--3--6591Chr02:33713488..33713512 (25 bp)
GATTGCGAGAAGACCCCTTGTAATA
LOC_Os02g55030
Os.7748.1.S1_at--248--1991Chr02:33713531..33713555 (25 bp)
ACTGCTGTTGTTCTATGGTGCATGA
LOC_Os02g55030
Os.7748.1.S1_at--385--8151Chr02:33713565..33713589 (25 bp)
GGAAATCACGTGAAACTACACTGGA
LOC_Os02g55030
Os.7748.1.S1_at--684--3451Chr02:33713593..33713617 (25 bp)
CAGTAATACACTGATCGTTCTGTCC
LOC_Os02g55030
Target Sequence 
GCAAACGATCAGTAGGGTGCTCGGTTTAGCAAGCTACGTGCTTCAGTGGAACTCTGCAAGAAAACGTATTTTGTTCGATC
CTAAGATACTCCATGACAAGAAAAGCGAAACGGGAAGTTAGGAATAAATGGACAAGTTATCCATAAACAATAATGTTCAT
GTCTTATTTTTATATTTATTACGTCTTTGATTGCGAGAAGACCCCTTGTAATATTTCAGGATTATCATCANACTGCTGTT
GTTCTATGGTGCATGAGATGACCGGGGAAATCACGTGAAACTACACTGGATAGCAGTAATACACTGATCGTTCTGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7748.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis