Browse Element(s) Details


Os.4222.1.S1_at

Description gb:AK068858.1
DB_XREF= gi:32978883
TID=Os.4222.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4222 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013169B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013169B12, full insert sequence.
FL= gb:AK068858.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0721011/11Ribonucleoside-diphosphate reductase large subunit, putative, expressed
LOC_Os02g550101/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g07150OsAffx.22574.1.S1_at8/116+3424691..3425038hypothetical protein
LOC_Os06g07160Os.33725.1.S1_at11/116+3427705..3432478metaxin, putative, expressed
LOC_Os06g07160Os.51581.1.S1_at1/116+3427705..3432478metaxin, putative, expressed
LOC_Os06g07170NANA6+3432634..3433780hypothetical protein
LOC_Os06g07180OsAffx.27485.1.S1_at10/116+3436575..3437625expressed protein
LOC_Os06g07190Os.49094.1.S1_at8/116+3439121..3442076expressed protein
LOC_Os06g07200OsAffx.15295.1.S1_at11/116+3444020..3447314Syntaxin 132, putative, expressed
LOC_Os06g07200Os.18952.1.S1_at11/116+3444020..3447314Syntaxin 132, putative, expressed
LOC_Os06g07200OsAffx.15295.1.S1_x_at11/116+3444020..3447314Syntaxin 132, putative, expressed
LOC_Os06g07210Os.4222.1.S1_at11/116+3448701..3453748Ribonucleoside-diphosphate reductase large subunit, putative, expressed
LOC_Os06g07220Os.4223.1.S1_s_at11/116+3454801..3455812transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g07230Os.9247.2.S1_x_at11/116+3459182..3464374Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os06g07230Os.9247.1.S1_at9/116+3459182..3464374Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os06g07240NANA6+3467971..3468919expressed protein
LOC_Os06g07250Os.22995.1.S1_at1/116+3469796..3474964Protein GOS9, putative, expressed
LOC_Os06g07260OsAffx.4749.1.S1_x_at11/116+3476114..3476404wall-associated kinase, putative
LOC_Os06g07260OsAffx.4749.1.S1_at11/116+3476114..3476404wall-associated kinase, putative

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005971cellular_componentribonucleoside-diphosphate reductase complex
GO:0009524cellular_componentphragmoplast
GO:0004748molecular_functionribonucleoside-diphosphate reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4222.1.S1_at--1052--8311Chr06:3449134..3449158 (25 bp)
GGCTCAAATGGTTTGTTCCTTGAAC
LOC_Os06g07210
Os.4222.1.S1_at--826--1211Chr06:3449082..3449106 (25 bp)
AGTTAGATGCTTCACTACACAGTTA
LOC_Os06g07210
Os.4222.1.S1_at--434--1391Chr06:3449040..3449064 (25 bp)
AGACGACACCATTATACAACTGGCT
LOC_Os06g07210
Os.4222.1.S1_at--421--9311Chr06:3448933..3448957 (25 bp)
TCCCCTGTCTGCTGAATTTCATCTT
LOC_Os06g07210
Os.4222.1.S1_at--989--10311Chr06:3448917..3448941 (25 bp)
TTTCATCTTTGGCTTGTACTGTAAC
LOC_Os06g07210
Os.4222.1.S1_at--856--372Chr02:33699700..33699856 (25 bp)
ATCAAAATTCTTGGGTTACTGCAAA
LOC_Os02g55010
Os.4222.1.S1_at--463--4031Chr06:3448845..3448869 (25 bp)
CGTTATTGACGTGTGGTGTTGCCAT
LOC_Os06g07210
Os.4222.1.S1_at--591--7811Chr06:3448811..3448835 (25 bp)
GGTACTTTGGGTTTGGGAGTCTCAT
LOC_Os06g07210
Os.4222.1.S1_at--1128--6091Chr06:3448795..3448819 (25 bp)
GAGTCTCATGGTTTTGTATTTGCTT
LOC_Os06g07210
Os.4222.1.S1_at--262--6891Chr06:3448780..3448804 (25 bp)
GTATTTGCTTTTGCGTTATCATTTT
LOC_Os06g07210
Os.4222.1.S1_at--753--6991Chr06:3448747..3448771 (25 bp)
GTACGAGTGGCACATCTTTGGCTGT
LOC_Os06g07210
Target Sequence 
GGCTCAAATGGTTTGTTCCTTGAACAACCGGGAGGANGTGCTTGGCGTGTGGAAGTTAGATGCTTCACTACACAGTTAAA
ATCTATTTTTAACCAAGACGACACCATTATACAACTGGCTNANTCANTTGGTCTCAATAACTNGAAAAGGGNAGCCCTTC
GTGTAGTTTNGTATGAGCTGATTTCCATACTGGGGGGTAGTGGGGCTCCCCTGTCTGCTGAATTTCATCTTTGGCTTGTA
CTGTAACATCAAAATTCTTGGGTTACTGCAAATGTACATATGTGTTACTGTTAACGTTATTGACGTGTGGTGTTGCCATG
TTGGCAATGGTACTTTGGGTTTGGGAGTCTCATGGTTTTGTATTTGCTTTTGCGTTATCATTTTTTGATGTGGTACGAGT
GGCACATCTTTGGCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4222.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis