Browse Element(s) Details


Os.9247.1.S1_at

Description gb:AK111753.1
DB_XREF= gi:37988416
TID=Os.9247.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9247 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs C98382(C2985),D22444(C11129) correspond to a region of the predicted gene.~Similar to Arabidopsis thaliana APK1 gene for protein tyrosine-serine-threonine kinase.(D12522) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023055H24, full insert sequence.
FL= gb:AK111943.1 gb:AK111753.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g072309/11Protein kinase APK1B, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g07180OsAffx.27485.1.S1_at10/116+3436575..3437625expressed protein
LOC_Os06g07190Os.49094.1.S1_at8/116+3439121..3442076expressed protein
LOC_Os06g07200OsAffx.15295.1.S1_at11/116+3444020..3447314Syntaxin 132, putative, expressed
LOC_Os06g07200Os.18952.1.S1_at11/116+3444020..3447314Syntaxin 132, putative, expressed
LOC_Os06g07200OsAffx.15295.1.S1_x_at11/116+3444020..3447314Syntaxin 132, putative, expressed
LOC_Os06g07210Os.4222.1.S1_at11/116+3448701..3453748Ribonucleoside-diphosphate reductase large subunit, putative, expressed
LOC_Os06g07220Os.4223.1.S1_s_at11/116+3454801..3455812transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g07230Os.9247.2.S1_x_at11/116+3459182..3464374Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os06g07230Os.9247.1.S1_at9/116+3459182..3464374Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os06g07240NANA6+3467971..3468919expressed protein
LOC_Os06g07250Os.22995.1.S1_at1/116+3469796..3474964Protein GOS9, putative, expressed
LOC_Os06g07260OsAffx.4749.1.S1_x_at11/116+3476114..3476404wall-associated kinase, putative
LOC_Os06g07260OsAffx.4749.1.S1_at11/116+3476114..3476404wall-associated kinase, putative
LOC_Os06g07270OsAffx.27487.1.S1_at10/116+3482626..3483957hypothetical protein
LOC_Os06g07270OsAffx.16226.1.S1_at4/116+3482626..3483957hypothetical protein
LOC_Os06g07280OsAffx.27488.1.S1_at11/116+3488967..3489803Tubulin beta-1 chain, putative

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Gene Ontology Classification
GO idTypeName
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9247.1.S1_at--152--8711Chr06:3459720..3459744 (25 bp)
TGATTTTTAAGGTCATTTCCGGGTG
LOC_Os06g07230
Os.9247.1.S1_at--219--8291Chr06:3459662..3459686 (25 bp)
GGCTTGATAATCCTCAAATCCCTGG
LOC_Os06g07230
Os.9247.1.S1_at--679--9691Chr06:3459649..3459673 (25 bp)
TCAAATCCCTGGAGATGTGACGCCC
LOC_Os06g07230
Os.9247.1.S1_at--179--4191Chr06:3459625..3459649 (25 bp)
CCCTGATGTCTAATCTCGCTTATTA
LOC_Os06g07230
Os.9247.1.S1_at--1055--9471Chr06:3459504..3459528 (25 bp)
TCTGACAAGGGCTGATCATCCGGTT
LOC_Os06g07230
Os.9247.1.S1_at--1101--6331Chr06:3459479..3459503 (25 bp)
GATGCTTTCCAACTGTGAATACCGA
LOC_Os06g07230
Os.9247.1.S1_at--569--5231Chr06:3459456..3459480 (25 bp)
GAATACTACTTTCGAGATGCATGGT
LOC_Os06g07230
Os.9247.1.S1_at--989--7791Chr06:3459398..3459421 (24 bp)
GGTCCCTCACGTCTCATATTTAATA
LOC_Os06g07230
Os.9247.1.S1_at--1140--2271Chr06:3459340..3459364 (25 bp)
AAATGTTTGGGATGGCTCTCCCTCC
LOC_Os06g07230
Os.9247.1.S1_at--1027--3631NONE
CTTCCTCACTTTGTAGCTCTGGATA
NONE
Os.9247.1.S1_at--368--2811NONE
AAGATCTTTATTTACTCGCTCAACA
NONE
Target Sequence 
TGATTTTTAAGGTCATTTCCGGGTGCTTTGTTTTGGTTTTAATTGTATAGTGAAACTAGGCTTGATAATCCTCAAATCCC
TGGAGATGTGACGCCCCCTGATGTCTAATCTCGCTTATTAGATGATCAGCCGAACACTGTGTTTGGTGGCTGGTTGCACA
AGCGAAAAACGGCATGTACGTGTGGTTGGCTGCAACGTGTAATAACAACTTATTTTTCTGACAAGGGCTGATCATCCGGT
TGATGCTTTCCAACTGTGAATACCGAATACTACTTTCGAGATGCATGGTAATATAGTGGAAAGGGGTGTGTGGTTTAACC
CTCGGTCCCTCACGTCTCATATTTAATACCCAACACACTTATAATTTCTTCTTTAAAAATAAATGTTTGGGATGGCTCTC
CCTCCAATCTCGTTTTTTTTTTCCCGAATACTACTTTCCCTCTCTTCCTCACTTTGTAGCTCTGGATATNTTTATTTTAT
TCTGGATTTAAGATCTTTATTTACTCGCTCAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9247.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis