Browse Element(s) Details

Os.49094.1.S1_at

Description

gb:AK109865.1
DB_XREF= gi:32995074
TID=Os.49094.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49094 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-H10, full insert sequence.
FL= gb:AK109865.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g07190	8/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g07130	Os.34965.2.S1_s_at	11/11	6	+	3407661..3417592	Leucine Rich Repeat family protein, expressed
LOC_Os06g07130	Os.7011.1.S2_x_at	1/11	6	+	3407661..3417592	Leucine Rich Repeat family protein, expressed
LOC_Os06g07140	Os.4216.1.S1_a_at	11/11	6	+	3419508..3420519	Proteasome subunit alpha type 4, putative, expressed
LOC_Os06g07140	Os.4216.2.S1_x_at	11/11	6	+	3419508..3420519	Proteasome subunit alpha type 4, putative, expressed
LOC_Os06g07150	OsAffx.22574.1.S1_at	8/11	6	+	3424691..3425038	hypothetical protein
LOC_Os06g07160	Os.33725.1.S1_at	11/11	6	+	3427705..3432478	metaxin, putative, expressed
LOC_Os06g07160	Os.51581.1.S1_at	1/11	6	+	3427705..3432478	metaxin, putative, expressed
LOC_Os06g07170	NA	NA	6	+	3432634..3433780	hypothetical protein
LOC_Os06g07180	OsAffx.27485.1.S1_at	10/11	6	+	3436575..3437625	expressed protein
LOC_Os06g07190	Os.49094.1.S1_at	8/11	6	+	3439121..3442076	expressed protein
LOC_Os06g07200	OsAffx.15295.1.S1_at	11/11	6	+	3444020..3447314	Syntaxin 132, putative, expressed
LOC_Os06g07200	Os.18952.1.S1_at	11/11	6	+	3444020..3447314	Syntaxin 132, putative, expressed
LOC_Os06g07200	OsAffx.15295.1.S1_x_at	11/11	6	+	3444020..3447314	Syntaxin 132, putative, expressed
LOC_Os06g07210	Os.4222.1.S1_at	11/11	6	+	3448701..3453748	Ribonucleoside-diphosphate reductase large subunit, putative, expressed
LOC_Os06g07220	Os.4223.1.S1_s_at	11/11	6	+	3454801..3455812	transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g07230	Os.9247.2.S1_x_at	11/11	6	+	3459182..3464374	Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os06g07230	Os.9247.1.S1_at	9/11	6	+	3459182..3464374	Protein kinase APK1B, chloroplast precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.49094.1.S1_at--499--479	1	Chr06:3441414..3441438 (25 bp)	GCTCCATATTCCGAGTGACAGATTG	LOC_Os06g07190
Os.49094.1.S1_at--142--629	1	Chr06:3441457..3441481 (25 bp)	GATGTTCAATCACAGGGTGGATGCA	LOC_Os06g07190
Os.49094.1.S1_at--63--891	1	Chr06:3441721..3441745 (25 bp)	TGAGCAGCACGAACAAGATCACAGT	LOC_Os06g07190
Os.49094.1.S1_at--736--629	1	Chr06:3441804..3441828 (25 bp)	GATGATACCGATTTTATGGAGCAGA	LOC_Os06g07190
Os.49094.1.S1_at--892--647	1	Chr06:3441897..3441921 (25 bp)	GATACGCTGCTCCAGTTGAAATAGC	LOC_Os06g07190
Os.49094.1.S1_at--138--31	1	Chr06:3441917..3441941 (25 bp)	ATAGCCTGATTAGGAAGCTGCTTCC	LOC_Os06g07190
Os.49094.1.S1_at--856--627	1	Chr06:3441966..3441990 (25 bp)	GATGTCACCCTAATTTTCTGTTGTA	LOC_Os06g07190
Os.49094.1.S1_at--316--313	1	Chr06:3441977..3442001 (25 bp)	AATTTTCTGTTGTACCATCGACTGC	LOC_Os06g07190
Os.49094.1.S1_at--420--799	1	Chr06:3442057..3442081 (25 bp)	GGATGTTGATCTTATCCCAGAAACA	NONE
Os.49094.1.S1_at--386--1013	1	Chr06:3442069..3442093 (25 bp)	TATCCCAGAAACACACGAGTCAAGT	NONE
Os.49094.1.S1_at--1108--561	1	Chr06:3442094..3442118 (25 bp)	GACAAATTCTATGTTCTGGTGTTAC	NONE

Target Sequence

GCTCCATATTCCGAGTGACAGATTGATCATGTTCTCTTCTTTTGATGTTCAATCACAGGGTGGATGCAGAAATGAATTGT
CACGTAANNGGTTCTTTAATCCCACNTCACANTGGATNCATGCTNTGGTNNTCANTACACGATGATGAATATGCNNTGGA
AATCAACAGCGGNAAAAGNTCAAGGGATAACNAAATTAAAACTGAGCAGCACGAACAAGATCACAGTGTGAAGAGTTCTG
GAAGAAAACACAAGTCCAAGTCCCGAAAGAGGAGTTTTGAGGAAAGATGATACCGATTTTATGGAGCAGATTGTTTGAGT
AGAAATTATAGTTGATAGCTGGGAGCTGCGTCTGCTTCCTGTGAATAGCCACTGCAGAGATACGCTGCTCCAGTTGAAAT
AGCCTGATTAGGAAGCTGCTTCCTGACTGTTTTACAGTGTATTATCAGATGTCACCCTAATTTTCTGTTGTACCATCGAC
TGCCATGATGATGTAAAACAAATCAAGGATTTGATGTGTAACATTTACCTGTTCTAATGGATGTTGATCTTATCCCAGAA
ACACACGAGTCAAGTGACAAATTCTATGTTCTGGTGTTAC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis