Browse Element(s) Details

Os.4216.1.S1_a_at

Description

gb:AB026560.1
DB_XREF= gi:8671495
GEN=OsPAC1
TID=Os.4216.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4216 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsPAC1 mRNA for alpha 3 subunit of 20S proteasome, complete cds.
PROD=alpha 3 subunit of 20S proteasome
FL= gb:AB026560.1 gb:AK059984.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g07878	11/11	Proteasome subunit alpha type 4, putative, expressed
LOC_Os06g07978	11/11	Proteasome subunit alpha type 4, putative
LOC_Os06g07140	11/11	Proteasome subunit alpha type 4, putative, expressed
LOC_Os07g28590	3/11	transposon protein, putative, CACTA, En/Spm sub-class, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g07830	Os.10137.1.S1_a_at	11/11	6	+	3800241..3806767	Clathrin assembly protein, putative, expressed
LOC_Os06g07840	OsAffx.4759.1.S1_at	11/11	6	+	3809432..3809635	hypothetical protein
LOC_Os06g07850	Os.46012.2.S1_x_at	11/11	6	+	3812490..3818641	retrotransposon protein, putative, unclassified
LOC_Os06g07850	Os.46012.3.S1_x_at	7/11	6	+	3812490..3818641	retrotransposon protein, putative, unclassified
LOC_Os06g07850	Os.27088.1.A1_x_at	6/11	6	+	3812490..3818641	retrotransposon protein, putative, unclassified
LOC_Os06g07850	Os.54691.1.S1_x_at	3/11	6	+	3812490..3818641	retrotransposon protein, putative, unclassified
LOC_Os06g07860	Os.3545.1.S1_at	11/11	6	+	3822022..3826345	Cystathionine beta-lyase, chloroplast precursor, putative, expressed
LOC_Os06g07869	OsAffx.27501.1.S1_at	9/11	6	+	3827205..3828962	hypothetical protein
LOC_Os06g07878	Os.4216.1.S1_at	11/11	6	+	3831013..3832095	Proteasome subunit alpha type 4, putative, expressed
LOC_Os06g07878	Os.4216.1.S1_a_at	11/11	6	+	3831013..3832095	Proteasome subunit alpha type 4, putative, expressed
LOC_Os06g07878	Os.4216.2.S1_x_at	6/11	6	+	3831013..3832095	Proteasome subunit alpha type 4, putative, expressed
LOC_Os06g07887	OsAffx.27499.3.S1_x_at	11/11	6	+	3833300..3835514	Exostosin family protein
LOC_Os06g07887	OsAffx.13617.1.S1_x_at	2/11	6	+	3833300..3835514	Exostosin family protein
LOC_Os06g07887	Os.51833.1.S1_x_at	1/11	6	+	3833300..3835514	Exostosin family protein
LOC_Os06g07896	OsAffx.27499.2.S1_at	11/11	6	+	3836429..3839148	ribosomal protein S15 containing protein
LOC_Os06g07905	Os.4754.1.S1_at	11/11	6	+	3839733..3843897	galactosyltransferase family protein, putative, expressed
LOC_Os06g07914	OsAffx.22569.2.S1_at	11/11	6	+	3845137..3846812	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g07914	OsAffx.22569.2.S1_x_at	11/11	6	+	3845137..3846812	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g07914	OsAffx.22569.1.S1_x_at	7/11	6	+	3845137..3846812	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g07923	Os.27542.1.A1_at	11/11	6	+	3851140..3853472	expressed protein
LOC_Os06g07923	Os.20904.1.S1_at	8/11	6	+	3851140..3853472	expressed protein
LOC_Os06g07923	OsAffx.19206.1.S1_x_at	2/11	6	+	3851140..3853472	expressed protein
LOC_Os06g07932	Os.15663.1.S1_at	5/11	6	+	3853649..3856371	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g07932	Os.10521.1.S1_at	2/11	6	+	3853649..3856371	oxidoreductase, 2OG-Fe oxygenase family protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolism
GO:0005634	cellular_component	nucleus
GO:0005819	cellular_component	spindle
GO:0005839	cellular_component	proteasome core complex (sensu Eukaryota)
GO:0009524	cellular_component	phragmoplast
GO:0019773	cellular_component	proteasome core complex, alpha-subunit complex (sensu Eukaryota)
GO:0008233	molecular_function	peptidase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.4216.1.S1_a_at--373--303	3	Chr06:3869499..3869523 (25 bp)	AATCCCTCTGCGACACCAAGCAGGG	LOC_Os06g07978
Os.4216.1.S1_a_at--996--833	4	Chr07:16729546..16729567 (22 bp)	GGCTGGGACAAGCACCATGGCTTCC	LOC_Os07g28590
Os.4216.1.S1_a_at--1006--761	4	Chr07:16729547..16729571 (25 bp)	GGGACAAGCACCATGGCTTCCAGCT	LOC_Os07g28590
Os.4216.1.S1_a_at--1025--85	4	Chr07:16729559..16729583 (25 bp)	ATGGCTTCCAGCTCTACATGAGCGA	LOC_Os07g28590
Os.4216.1.S1_a_at--654--515	3	Chr06:3869625..3869649 (25 bp)	GCAACTACAGCGGCTGGAAGGCCGC	LOC_Os06g07978
Os.4216.1.S1_a_at--929--755	3	Chr06:3869658..3869682 (25 bp)	GGGCCAACAGCCAGGCGGCGCAGTC	LOC_Os06g07978
Os.4216.1.S1_a_at--620--277	3	Chr06:3869756..3869780 (25 bp)	AAGACCATGGATTCGACCAGCTTGA	LOC_Os06g07978
Os.4216.1.S1_a_at--423--585	3	Chr06:3869758..3869782 (25 bp)	GACCATGGATTCGACCAGCTTGACC	LOC_Os06g07978
Os.4216.1.S1_a_at--188--83	3	Chr06:3869762..3869786 (25 bp)	ATGGATTCGACCAGCTTGACCGCCG	LOC_Os06g07978
Os.4216.1.S1_a_at--575--9	3	Chr06:3869766..3869790 (25 bp)	ATTCGACCAGCTTGACCGCCGAGAA	LOC_Os06g07978
Os.4216.1.S1_a_at--208--409	3	Chr06:3869769..3869793 (25 bp)	CGACCAGCTTGACCGCCGAGAAGCT	LOC_Os06g07978

Target Sequence

AATCCCTCTGCGACACCAAGCAGGGGTACACCCAGTTCGGCGGCCTCCGCCCCTTCGGCGTCTCCTTCCTCTTCGCCGGC
TGGGACAAGCACCATGGCTTCCAGCTCTACATGAGCGACCCCTCCGGCAACTACAGCGGCTGGAAGGCCGCCGCCGTCGG
GGCCAACAGCCAGGCGGCGCAGTCCATGCTCAAGCAGGACTACCGCGACGGGATGACACGGGAGGAGGCCGTCGCCCTCG
CCCTCAAGGTGCTTAGCAAGACCATGGATTCGACCAGCTTGACCGCCGAGAAGCT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis