Browse Element(s) Details


OsAffx.19206.1.S1_x_at

Description tigr:9639.m03343
TID=OsAffx.19206.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3698010/11hypothetical protein
LOC_Os06g079232/11expressed protein
LOC_Os06g080232/11oxidoreductase, 2OG-Fe oxygenase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36960OsAffx.31338.3.S1_at11/1111+21304782..21307940DnaJ domain containing protein, expressed
LOC_Os11g36970OsAffx.31338.2.S1_at10/1111+21315132..21322141Zinc finger, C3HC4 type family protein
LOC_Os11g36970OsAffx.31338.1.S1_at9/1111+21315132..21322141Zinc finger, C3HC4 type family protein
LOC_Os11g36970OsAffx.29218.1.S1_s_at8/1111+21315132..21322141Zinc finger, C3HC4 type family protein
LOC_Os11g36970OsAffx.2057.3.S1_at1/1111+21315132..21322141Zinc finger, C3HC4 type family protein
LOC_Os11g36980OsAffx.19206.1.S1_x_at10/1111+21323412..21324285hypothetical protein
LOC_Os11g36980Os.27542.1.A1_at2/1111+21323412..21324285hypothetical protein
LOC_Os11g36990NANA11+21326069..21329390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g37000Os.50473.1.S1_at11/1111+21337869..21342223DnaJ domain containing protein, expressed
LOC_Os11g37010Os.54122.1.S1_at11/1111+21348936..21350769expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0009813biological_processflavonoid biosynthesis
GO:0010261biological_processorgan senescence (sensu Magnoliophyta)
GO:0016491molecular_functionoxidoreductase activity
GO:0016682molecular_functionoxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19206.1.S1_x_at--183--9051Chr11:21324184..21324208 (25 bp)
TGCAGTGCCCTCCTCGGCCAGGTGG
LOC_Os11g36980
OsAffx.19206.1.S1_x_at--1134--45312Chr07:27953732..27954146 (25 bp)
GCGCCGTCAAGGTTGTAGGGTCCCA
NONE
OsAffx.19206.1.S1_x_at--677--8697Chr07:27954135..27954159 (25 bp)
TGTAGGGTCCCAGGCGAAAGCCTAG
NONE
OsAffx.19206.1.S1_x_at--1065--5531Chr11:21323631..21323655 (25 bp)
GAAAGCCTAGTCTGGTGGTGCACCG
LOC_Os11g36980
OsAffx.19206.1.S1_x_at--889--7771Chr11:21323615..21323639 (25 bp)
GGTGCACCGGGCCAGCAGCGGCTAC
LOC_Os11g36980
OsAffx.19206.1.S1_x_at--80--15112Chr07:5939130..5939154 (25 bp)
AGCAGCGGCTACGTCTTCGGGCGTC
NONE
OsAffx.19206.1.S1_x_at--581--9174Chr12:25321338..25321477 (24 bp)
TCTTCGGGCGTCGTAACCTTCTTGG
NONE
OsAffx.19206.1.S1_x_at--719--3651NONE
CTTCTTGGGGCATTGTCGAGGGATA
NONE
OsAffx.19206.1.S1_x_at--965--4931Chr11:21323508..21323587 (25 bp)
GCATTGTCGAGGGATAGGCGATGAC
LOC_Os11g36980
OsAffx.19206.1.S1_x_at--904--6131Chr11:21323500..21323520 (21 bp)
GAGGGATAGGCGATGACGGCATCCT
LOC_Os11g36980
OsAffx.19206.1.S1_x_at--484--7951Chr11:21323497..21323520 (24 bp)
GGATAGGCGATGACGGCATCCTGGA
LOC_Os11g36980
Target Sequence 
TGCAGTGCCCTCCTCGGCCAGGTGGGCTGTGCGGCGCGGCCAGATGGGGTGCGGCGACCGGGTGACGGGGCGCCGTCAAG
GTTGTAGGGTCCCAGGCGAAAGCCTAGTCTGGTGGTGCACCGGGCCAGCAGCGGCTACGTCTTCGGGCGTCGTAACCTTC
TTGGGGCATTGTCGAGGGATAGGCGATGACGGCATCCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19206.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis