Browse Element(s) Details


OsAffx.31338.2.S1_at

Description tigr:9639.m03342
TID=OsAffx.31338.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C3HC4 type (RING finger), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3697010/11Zinc finger, C3HC4 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36940OsAffx.31336.1.S1_x_at11/1111+21288784..21290262Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os11g36940OsAffx.31336.1.S1_at11/1111+21288784..21290262Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os11g36950OsAffx.31337.1.S1_at10/1111+21295469..21297132T-complex protein 1, theta subunit, putative
LOC_Os11g36960OsAffx.31338.3.S1_at11/1111+21304782..21307940DnaJ domain containing protein, expressed
LOC_Os11g36970OsAffx.31338.2.S1_at10/1111+21315132..21322141Zinc finger, C3HC4 type family protein
LOC_Os11g36970OsAffx.31338.1.S1_at9/1111+21315132..21322141Zinc finger, C3HC4 type family protein
LOC_Os11g36970OsAffx.29218.1.S1_s_at8/1111+21315132..21322141Zinc finger, C3HC4 type family protein
LOC_Os11g36970OsAffx.2057.3.S1_at1/1111+21315132..21322141Zinc finger, C3HC4 type family protein
LOC_Os11g36980OsAffx.19206.1.S1_x_at10/1111+21323412..21324285hypothetical protein
LOC_Os11g36980Os.27542.1.A1_at2/1111+21323412..21324285hypothetical protein
LOC_Os11g36990NANA11+21326069..21329390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g37000Os.50473.1.S1_at11/1111+21337869..21342223DnaJ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31338.2.S1_at--526--4411Chr11:21319470..21319492 (23 bp)
GCCAGAGCAGTGTTCATGCCTGACA
LOC_Os11g36970
OsAffx.31338.2.S1_at--1035--2251Chr11:21319497..21319521 (25 bp)
AAATACAGTTGTGGAGATACCTACA
LOC_Os11g36970
OsAffx.31338.2.S1_at--142--10752Chr11:21319531..21319555 (25 bp)
TTGAGGTTTTCTCACCGAATCCCCT
LOC_Os11g36970
OsAffx.31338.2.S1_at--373--8811Chr11:21319620..21319644 (25 bp)
TGTTCCTGATGTTTTCCTGTATAGG
LOC_Os11g36970
OsAffx.31338.2.S1_at--808--8171Chr11:21320955..21320979 (25 bp)
GGAACTGATGCACTAAATTTTATTT
LOC_Os11g36970
OsAffx.31338.2.S1_at--205--1331NONE
AGAGGCTAGCTATTGGGCATTCCCA
NONE
OsAffx.31338.2.S1_at--603--10651Chr11:21321850..21321874 (25 bp)
TTCCCAATGTTTACCGCTCAATGAG
LOC_Os11g36970
OsAffx.31338.2.S1_at--481--3591Chr11:21321884..21321908 (25 bp)
CATTCTTGGTTGTATGACAGCCATA
LOC_Os11g36970
OsAffx.31338.2.S1_at--76--5651Chr11:21321941..21321965 (25 bp)
GACACCATCGCAACACTGGTAGCGT
LOC_Os11g36970
OsAffx.31338.2.S1_at--170--10231Chr11:21322059..21322083 (25 bp)
TTTGGCGGCTGGCTAAAGCCGCAAT
LOC_Os11g36970
OsAffx.31338.2.S1_at--760--4111Chr11:21322078..21322102 (25 bp)
CGCAATCCCTGTTGTGGTAGTCATT
LOC_Os11g36970
Target Sequence 
GCCAGAGCAGTGTTCATGCCTGACAAGCGAAATACAGTTGTGGAGATACCTACAAGAGATCGTTTGAGGTTTTCTCACCG
AATCCCCTCCTTCCTTTTGACAGAAGAAAGAGGTGGCAGGCTCCGTGGCTTCTATGAGCTCGATCCAGCTTCTGTTCCTG
ATGTTTTCCTGTATAGGAACACTGTTATGGGCTGGAGTGGCATGAGAGGAACTGATGCACTAAATTTTATTTTTTTTACA
TATTGGAATGCAACAGAGAAGAGGCTAGCTATTGGGCATTCCCAATGTTTACCGCTCAATGAGCCCTCTTTTCATTCTTG
GTTGTATGACAGCCATAAGAAGATGGTCAAGGAACATCGCCGGGGATTCGACACCATCGCAACACTGGTAGCGTGGACGA
TTTGGAAGGAAAGAAACAATTGGGTCTTCAACCAGAAGAGCAGAACATGGGCGGAGATTGCAAGGGTTATGACGGGTGAA
GCGGAGCTTTGGCGGCTGGCTAAAGCCGCAATCCCTGTTGTGGTAGTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31338.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis