Browse Element(s) Details

OsAffx.22569.2.S1_x_at

Description

tigr:9634.m00726
TID=OsAffx.22569.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=oxidoreductase, 2OG-Fe(II) oxygenase family, putative
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g08014	11/11	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g07914	11/11	oxidoreductase, 2OG-Fe oxygenase family protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g07941	Os.27693.1.S1_at	11/11	6	+	3857435..3859726	iron/ascorbate-dependent oxidoreductase, putative, expressed
LOC_Os06g07941	OsAffx.22569.1.S1_x_at	1/11	6	+	3857435..3859726	iron/ascorbate-dependent oxidoreductase, putative, expressed
LOC_Os06g07960	Os.3545.1.S1_at	11/11	6	+	3860286..3864403	Cystathionine beta-lyase, chloroplast precursor, putative, expressed
LOC_Os06g07969	Os.3546.1.S1_at	11/11	6	+	3865261..3867200	expressed protein
LOC_Os06g07969	OsAffx.27501.1.S1_at	9/11	6	+	3865261..3867200	expressed protein
LOC_Os06g07978	Os.4216.1.S1_a_at	11/11	6	+	3869165..3869917	Proteasome subunit alpha type 4, putative
LOC_Os06g07978	Os.4216.2.S1_x_at	6/11	6	+	3869165..3869917	Proteasome subunit alpha type 4, putative
LOC_Os06g07978	Os.4216.1.S1_at	1/11	6	+	3869165..3869917	Proteasome subunit alpha type 4, putative
LOC_Os06g07987	OsAffx.27499.3.S1_x_at	11/11	6	+	3871356..3873570	Exostosin family protein
LOC_Os06g07987	OsAffx.13617.1.S1_x_at	2/11	6	+	3871356..3873570	Exostosin family protein
LOC_Os06g07987	Os.51833.1.S1_x_at	1/11	6	+	3871356..3873570	Exostosin family protein
LOC_Os06g07996	OsAffx.27499.2.S1_at	11/11	6	+	3874485..3877204	ribosomal protein S15 containing protein
LOC_Os06g08005	Os.4754.1.S1_at	11/11	6	+	3877872..3882078	galactosyltransferase family protein, putative, expressed
LOC_Os06g08014	OsAffx.22569.2.S1_x_at	11/11	6	+	3883193..3884868	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08014	OsAffx.22569.2.S1_at	11/11	6	+	3883193..3884868	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08014	OsAffx.22569.1.S1_x_at	7/11	6	+	3883193..3884868	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08023	Os.27542.1.A1_at	11/11	6	+	3888191..3891360	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08023	Os.20904.1.S1_at	8/11	6	+	3888191..3891360	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08023	OsAffx.19206.1.S1_x_at	2/11	6	+	3888191..3891360	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08032	Os.15663.1.S1_at	5/11	6	+	3892673..3894157	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08041	Os.27693.1.S1_at	11/11	6	+	3895491..3897525	iron/ascorbate-dependent oxidoreductase, putative
LOC_Os06g08041	OsAffx.22569.1.S1_x_at	1/11	6	+	3895491..3897525	iron/ascorbate-dependent oxidoreductase, putative
LOC_Os06g08060	Os.54275.1.S1_at	11/11	6	+	3899489..3902057	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g08070	Os.41695.15.S1_s_at	11/11	6	+	3902683..3909686	transposon protein, putative, Mutator sub-class
LOC_Os06g08070	Os.41695.5.S1_x_at	8/11	6	+	3902683..3909686	transposon protein, putative, Mutator sub-class
LOC_Os06g08070	Os.41695.2.S1_x_at	4/11	6	+	3902683..3909686	transposon protein, putative, Mutator sub-class
LOC_Os06g08070	Os.41695.3.S1_x_at	4/11	6	+	3902683..3909686	transposon protein, putative, Mutator sub-class
LOC_Os06g08070	Os.41695.4.S1_x_at	3/11	6	+	3902683..3909686	transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0008152	biological_process	metabolism
GO:0009813	biological_process	flavonoid biosynthesis
GO:0016491	molecular_function	oxidoreductase activity
GO:0016706	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.22569.2.S1_x_at--653--129	2	Chr06:3883653..3883677 (25 bp)	AGATCCTCGACTGGTGCGACCGGCT	LOC_Os06g08014
OsAffx.22569.2.S1_x_at--492--381	2	Chr06:3883751..3883775 (25 bp)	CTCCTCGAGGAGTACACGCGGCGGA	LOC_Os06g08014
OsAffx.22569.2.S1_x_at--730--289	2	Chr06:3883862..3883886 (25 bp)	AAGGTGACGACGTACGCGCGGTTCA	LOC_Os06g08014
OsAffx.22569.2.S1_x_at--706--447	2	Chr06:3883909..3883933 (25 bp)	GCCGGAGCTCGTGTACGGCCTCAAG	LOC_Os06g08014
OsAffx.22569.2.S1_x_at--95--293	2	Chr06:3884003..3884027 (25 bp)	AAGGACGGCCGCTGGCTCGACATTC	LOC_Os06g08014
OsAffx.22569.2.S1_x_at--383--567	2	Chr06:3884021..3884045 (25 bp)	GACATTCCGGTGCTCACCAACGAGC	LOC_Os06g08014
OsAffx.22569.2.S1_x_at--1127--415	2	Chr06:3884056..3884562 (25 bp)	CGCCGGCGACGAGATTGAGTTGTTT	LOC_Os06g08014
OsAffx.22569.2.S1_x_at--613--1027	2	Chr06:3884695..3884719 (25 bp)	TTTGCATTGCTTGGTGTTGCAGATC	LOC_Os06g08014
OsAffx.22569.2.S1_x_at--262--667	2	Chr06:3884710..3884734 (25 bp)	GTTGCAGATCATGAGCAAGTGTTCA	LOC_Os06g08014
OsAffx.22569.2.S1_x_at--650--147	2	Chr06:3884723..3884747 (25 bp)	AGCAAGTGTTCATGGCGCCGGTGCA	LOC_Os06g08014
OsAffx.22569.2.S1_x_at--889--749	2	Chr06:3884782..3884806 (25 bp)	GTGGTGATGTTCTACCAGCCGGAGC	LOC_Os06g08014

Target Sequence

AGATCCTCGACTGGTGCGACCGGCTCTACCTCCAGGTGCAGCCGGAGGAGGAGCGGCGGCTGGAGTTCTGGCCGGAGCAC
CCGGCGGCGCTCCGGGGACTCCTCGAGGAGTACACGCGGCGGAGCGAGCAGGTGTTCCGGCGGGTGCTCGCCGCCACGGC
GAGGTCGCTGGGGTTCGGGGAGGAGTTCTTCGGCGACAAGGTCGGCGAGAAGGTGACGACGTACGCGCGGTTCACCTACT
ACCCGCCATGCCCGCGGCCGGAGCTCGTGTACGGCCTCAAGCCCCACACGGACAACTCCGTCCTCACCGTCCTCCTCCTC
GACAAGCACGTCGGCGGCCTCCAGCTGCTCAAGGACGGCCGCTGGCTCGACATTCCGGTGCTCACCAACGAGCTCCTCGT
CGTCGCCGGCGACGAGATTGAGTTGTTTGCATTGCTTGGTGTTGCAGATCATGAGCAAGTGTTCATGGCGCCGGTGCACA
GGGTGGTGACGAGCGAGAGGGAGAGGATGTCGGTGGTGATGTTCTACCAGCCGGAGC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis