Browse Element(s) Details

Os.3546.1.S1_at

Description

gb:AK120341.1
DB_XREF= gi:37989964
TID=Os.3546.1
CNT=71
FEA=FLmRNA
TIER=FL+Stack
STK=40
UG=Os.3546 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) EST AU082567(S21715) corresponds to a region of the predicted gene.~Similar to S.tuberosum ubiquinol cytochrome c reductase. (X79275) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013061B12, full insert sequence.
FL= gb:AK119716.1 gb:AK120341.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g07969	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g07905	Os.4754.1.S1_at	11/11	6	+	3839733..3843897	galactosyltransferase family protein, putative, expressed
LOC_Os06g07914	OsAffx.22569.2.S1_at	11/11	6	+	3845137..3846812	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g07914	OsAffx.22569.2.S1_x_at	11/11	6	+	3845137..3846812	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g07914	OsAffx.22569.1.S1_x_at	7/11	6	+	3845137..3846812	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g07923	Os.27542.1.A1_at	11/11	6	+	3851140..3853472	expressed protein
LOC_Os06g07923	Os.20904.1.S1_at	8/11	6	+	3851140..3853472	expressed protein
LOC_Os06g07923	OsAffx.19206.1.S1_x_at	2/11	6	+	3851140..3853472	expressed protein
LOC_Os06g07932	Os.15663.1.S1_at	5/11	6	+	3853649..3856371	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g07932	Os.10521.1.S1_at	2/11	6	+	3853649..3856371	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g07941	Os.27693.1.S1_at	11/11	6	+	3857435..3859726	iron/ascorbate-dependent oxidoreductase, putative, expressed
LOC_Os06g07941	OsAffx.22569.1.S1_x_at	1/11	6	+	3857435..3859726	iron/ascorbate-dependent oxidoreductase, putative, expressed
LOC_Os06g07960	Os.3545.1.S1_at	11/11	6	+	3860286..3864403	Cystathionine beta-lyase, chloroplast precursor, putative, expressed
LOC_Os06g07969	Os.3546.1.S1_at	11/11	6	+	3865261..3867200	expressed protein
LOC_Os06g07969	OsAffx.27501.1.S1_at	9/11	6	+	3865261..3867200	expressed protein
LOC_Os06g07978	Os.4216.1.S1_a_at	11/11	6	+	3869165..3869917	Proteasome subunit alpha type 4, putative
LOC_Os06g07978	Os.4216.2.S1_x_at	6/11	6	+	3869165..3869917	Proteasome subunit alpha type 4, putative
LOC_Os06g07978	Os.4216.1.S1_at	1/11	6	+	3869165..3869917	Proteasome subunit alpha type 4, putative
LOC_Os06g07987	OsAffx.27499.3.S1_x_at	11/11	6	+	3871356..3873570	Exostosin family protein
LOC_Os06g07987	OsAffx.13617.1.S1_x_at	2/11	6	+	3871356..3873570	Exostosin family protein
LOC_Os06g07987	Os.51833.1.S1_x_at	1/11	6	+	3871356..3873570	Exostosin family protein
LOC_Os06g07996	OsAffx.27499.2.S1_at	11/11	6	+	3874485..3877204	ribosomal protein S15 containing protein
LOC_Os06g08005	Os.4754.1.S1_at	11/11	6	+	3877872..3882078	galactosyltransferase family protein, putative, expressed
LOC_Os06g08014	OsAffx.22569.2.S1_x_at	11/11	6	+	3883193..3884868	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08014	OsAffx.22569.2.S1_at	11/11	6	+	3883193..3884868	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08014	OsAffx.22569.1.S1_x_at	7/11	6	+	3883193..3884868	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08023	Os.27542.1.A1_at	11/11	6	+	3888191..3891360	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08023	Os.20904.1.S1_at	8/11	6	+	3888191..3891360	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08023	OsAffx.19206.1.S1_x_at	2/11	6	+	3888191..3891360	oxidoreductase, 2OG-Fe oxygenase family protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006118	biological_process	electron transport
GO:0005739	cellular_component	mitochondrion
GO:0008121	molecular_function	ubiquinol-cytochrome-c reductase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.3546.1.S1_at--568--789	2	Chr06:3867047..3867071 (25 bp)	GGTTCAGTTATAGTTGTCCATGTAC	LOC_Os06g07969
Os.3546.1.S1_at--251--125	2	Chr06:3867058..3867082 (25 bp)	AGTTGTCCATGTACTGTTTTCCATC	LOC_Os06g07969
Os.3546.1.S1_at--815--991	2	Chr06:3867069..3867093 (25 bp)	TACTGTTTTCCATCGTTCCATGCAT	LOC_Os06g07969
Os.3546.1.S1_at--709--669	2	Chr06:3867083..3867107 (25 bp)	GTTCCATGCATCTCCAGTATGTATG	LOC_Os06g07969
Os.3546.1.S1_at--866--497	2	Chr06:3867090..3867114 (25 bp)	GCATCTCCAGTATGTATGACTTGCA	LOC_Os06g07969
Os.3546.1.S1_at--107--569	2	Chr06:3867107..3867131 (25 bp)	GACTTGCAAACTTATTTTTGCGGCT	LOC_Os06g07969
Os.3546.1.S1_at--1018--1027	2	Chr06:3867123..3867147 (25 bp)	TTTGCGGCTTGCTACATATGGTGGC	LOC_Os06g07969
Os.3546.1.S1_at--1007--907	2	Chr06:3867132..3867156 (25 bp)	TGCTACATATGGTGGCATTCCCTGT	LOC_Os06g07969
Os.3546.1.S1_at--674--1011	2	Chr06:3867139..3867163 (25 bp)	TATGGTGGCATTCCCTGTCACTGAA	LOC_Os06g07969
Os.3546.1.S1_at--28--495	2	Chr06:3867146..3867170 (25 bp)	GCATTCCCTGTCACTGAAGCAATTG	LOC_Os06g07969
Os.3546.1.S1_at--745--419	2	Chr06:3867151..3867175 (25 bp)	CCCTGTCACTGAAGCAATTGTTTAA	LOC_Os06g07969

Target Sequence

GGTTCAGTTATAGTTGTCCATGTACTGTTTTCCATCGTTCCATGCATCTCCAGTATGTATGACTTGCAAACTTATTTTTG
CGGCTTGCTACATATGGTGGCATTCCCTGTCACTGAAGCAATTGTTTAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis