Browse Element(s) Details

Os.3545.1.S1_at

Description

gb:AK119521.1
DB_XREF= gi:37989144
TID=Os.3545.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3545 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) EST AU082557(R0845) corresponds to a region of the predicted gene.~Similar to Arabidopsis thaliana cystathionine beta-lyase precursor (P53780) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-202-D09, full insert sequence.
FL= gb:AK119521.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g07960	11/11	Cystathionine beta-lyase, chloroplast precursor, putative, expressed
LOC_Os06g07860	11/11	Cystathionine beta-lyase, chloroplast precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g07887	OsAffx.27499.3.S1_x_at	11/11	6	+	3833300..3835514	Exostosin family protein
LOC_Os06g07887	OsAffx.13617.1.S1_x_at	2/11	6	+	3833300..3835514	Exostosin family protein
LOC_Os06g07887	Os.51833.1.S1_x_at	1/11	6	+	3833300..3835514	Exostosin family protein
LOC_Os06g07896	OsAffx.27499.2.S1_at	11/11	6	+	3836429..3839148	ribosomal protein S15 containing protein
LOC_Os06g07905	Os.4754.1.S1_at	11/11	6	+	3839733..3843897	galactosyltransferase family protein, putative, expressed
LOC_Os06g07914	OsAffx.22569.2.S1_at	11/11	6	+	3845137..3846812	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g07914	OsAffx.22569.2.S1_x_at	11/11	6	+	3845137..3846812	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g07914	OsAffx.22569.1.S1_x_at	7/11	6	+	3845137..3846812	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g07923	Os.27542.1.A1_at	11/11	6	+	3851140..3853472	expressed protein
LOC_Os06g07923	Os.20904.1.S1_at	8/11	6	+	3851140..3853472	expressed protein
LOC_Os06g07923	OsAffx.19206.1.S1_x_at	2/11	6	+	3851140..3853472	expressed protein
LOC_Os06g07932	Os.15663.1.S1_at	5/11	6	+	3853649..3856371	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g07932	Os.10521.1.S1_at	2/11	6	+	3853649..3856371	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g07941	Os.27693.1.S1_at	11/11	6	+	3857435..3859726	iron/ascorbate-dependent oxidoreductase, putative, expressed
LOC_Os06g07941	OsAffx.22569.1.S1_x_at	1/11	6	+	3857435..3859726	iron/ascorbate-dependent oxidoreductase, putative, expressed
LOC_Os06g07960	Os.3545.1.S1_at	11/11	6	+	3860286..3864403	Cystathionine beta-lyase, chloroplast precursor, putative, expressed
LOC_Os06g07969	Os.3546.1.S1_at	11/11	6	+	3865261..3867200	expressed protein
LOC_Os06g07969	OsAffx.27501.1.S1_at	9/11	6	+	3865261..3867200	expressed protein
LOC_Os06g07978	Os.4216.1.S1_a_at	11/11	6	+	3869165..3869917	Proteasome subunit alpha type 4, putative
LOC_Os06g07978	Os.4216.2.S1_x_at	6/11	6	+	3869165..3869917	Proteasome subunit alpha type 4, putative
LOC_Os06g07978	Os.4216.1.S1_at	1/11	6	+	3869165..3869917	Proteasome subunit alpha type 4, putative
LOC_Os06g07987	OsAffx.27499.3.S1_x_at	11/11	6	+	3871356..3873570	Exostosin family protein
LOC_Os06g07987	OsAffx.13617.1.S1_x_at	2/11	6	+	3871356..3873570	Exostosin family protein
LOC_Os06g07987	Os.51833.1.S1_x_at	1/11	6	+	3871356..3873570	Exostosin family protein
LOC_Os06g07996	OsAffx.27499.2.S1_at	11/11	6	+	3874485..3877204	ribosomal protein S15 containing protein
LOC_Os06g08005	Os.4754.1.S1_at	11/11	6	+	3877872..3882078	galactosyltransferase family protein, putative, expressed
LOC_Os06g08014	OsAffx.22569.2.S1_x_at	11/11	6	+	3883193..3884868	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08014	OsAffx.22569.2.S1_at	11/11	6	+	3883193..3884868	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08014	OsAffx.22569.1.S1_x_at	7/11	6	+	3883193..3884868	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08023	Os.27542.1.A1_at	11/11	6	+	3888191..3891360	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08023	Os.20904.1.S1_at	8/11	6	+	3888191..3891360	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08023	OsAffx.19206.1.S1_x_at	2/11	6	+	3888191..3891360	oxidoreductase, 2OG-Fe oxygenase family protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0009086	biological_process	methionine biosynthesis
GO:0019279	biological_process	methionine biosynthesis from L-homoserine via cystathione
GO:0009507	cellular_component	chloroplast
GO:0003962	molecular_function	cystathionine gamma-synthase activity
GO:0004121	molecular_function	cystathionine beta-lyase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.3545.1.S1_at--155--523	2	Chr06:3863489..3863513 (25 bp)	GAATTTCTAGCTTCTCATCCAAGAG	LOC_Os06g07960
Os.3545.1.S1_at--349--813	2	Chr06:3863534..3863558 (25 bp)	GGACTTCCTGATCATCCTGGACGAT	LOC_Os06g07960
Os.3545.1.S1_at--586--45	2	Chr06:3863557..3863731 (25 bp)	ATCTCTACACTATTCCCAGGCAAAG	LOC_Os06g07960
Os.3545.1.S1_at--192--289	2	Chr06:3863729..3863753 (25 bp)	AAGGGAGCGGGTTCAGTTCTCAGTT	LOC_Os06g07960
Os.3545.1.S1_at--43--981	2	Chr06:3863757..3863781 (25 bp)	TAACTGGTTCATTAGCTCTCTCAAA	LOC_Os06g07960
Os.3545.1.S1_at--69--737	2	Chr06:3864010..3864034 (25 bp)	GTGAAATCGCTCATTAGCCTGCCAT	LOC_Os06g07960
Os.3545.1.S1_at--2--589	2	Chr06:3864076..3864100 (25 bp)	GAGCGCGGCCTGACAGACGATCTAG	LOC_Os06g07960
Os.3545.1.S1_at--827--577	2	Chr06:3864130..3864154 (25 bp)	GACGACCTCATAGCGGATCTTGATC	LOC_Os06g07960
Os.3545.1.S1_at--518--1045	2	Chr06:3864177..3864201 (25 bp)	TTAGAGCCTGTGAATTCTGTGCCCT	LOC_Os06g07960
Os.3545.1.S1_at--66--455	2	Chr06:3864197..3864221 (25 bp)	GCCCTTCCTGTTCGTTAGGGATGTA	LOC_Os06g07960
Os.3545.1.S1_at--733--79	2	Chr06:3864223..3864247 (25 bp)	ATGTGGTCATGTGGGTGCTATCTGT	LOC_Os06g07960

Target Sequence

GAATTTCTAGCTTCTCATCCAAGAGTAAAGAAAGTGAACTATGCAGGACTTCCTGATCATCCTGGACGATCTCTACACTA
TTCCCAGGCAAAGGGAGCGGGTTCAGTTCTCAGTTTCCTAACTGGTTCATTAGCTCTCTCAAAACATGTTGTTGAGACCA
CAAAGTACTTCAATGTAACAGTTAGCTTTGGAAGTGTGAAATCGCTCATTAGCCTGCCATGCTTCATGTCACACGCCAGC
ATCCCTTCTGCGGTTCGCGAGGAGCGCGGCCTGACAGACGATCTAGTCAGGATATCGGTTGGAATTGAGGATGCCGACGA
CCTCATAGCGGATCTTGATCATGCTCTCCGGTCTGGTCCAGCTTAGAGCCTGTGAATTCTGTGCCCTTCCTGTTCGTTAG
GGATGTAGATGTGGTCATGTGGGTGCTATCTGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis