Browse Element(s) Details


OsAffx.13617.1.S1_x_at

Description tigr:9632.m00097
TID=OsAffx.13617.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=gene_id:MED24.9
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0193011/11exostosin family protein, putative
LOC_Os06g079872/11Exostosin family protein
LOC_Os06g078872/11Exostosin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01890OsAffx.25828.1.S1_at11/114+551025..553022Protein kinase domain containing protein
LOC_Os04g01900NANA4+557063..557893transposon protein, putative, unclassified
LOC_Os04g01910Os.51154.1.S1_at11/114+559389..560725expressed protein
LOC_Os04g01920NANA4+561017..561304hypothetical protein
LOC_Os04g01930OsAffx.13617.1.S1_x_at11/114+576481..578063exostosin family protein, putative
LOC_Os04g01930OsAffx.13617.1.S1_at11/114+576481..578063exostosin family protein, putative
LOC_Os04g01930OsAffx.27499.3.S1_x_at1/114+576481..578063exostosin family protein, putative
LOC_Os04g01940OsAffx.25829.1.S1_at11/114+579506..582256hypothetical protein
LOC_Os04g01950Os.51275.1.S1_at11/114+583902..584993expressed protein
LOC_Os04g01960Os.52971.1.S1_at9/114+590515..591421expressed protein
LOC_Os04g01970Os.51839.1.S1_x_at11/114+592840..599416SWIRM domain containing protein, expressed
LOC_Os04g01970Os.49437.1.S1_at1/114+592840..599416SWIRM domain containing protein, expressed
LOC_Os04g01980OsAffx.25830.1.S1_at11/114+600715..603239hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13617.1.S1_x_at--402--8033Chr04:577499..577523 (25 bp)
GGAGATCAACCTCTACGACGGCGAC
LOC_Os04g01930
OsAffx.13617.1.S1_x_at--386--9271Chr04:577618..577642 (25 bp)
TCCTGCTCCGCCACTGGAAGGGACG
LOC_Os04g01930
OsAffx.13617.1.S1_x_at--1091--4391Chr04:577650..577674 (25 bp)
GCCACGTTCCCGGTGTACGAGTACG
LOC_Os04g01930
OsAffx.13617.1.S1_x_at--250--8391Chr04:577689..577713 (25 bp)
GGCGACTACTACTCGTTCATGCGGC
LOC_Os04g01930
OsAffx.13617.1.S1_x_at--763--1131Chr04:577786..577810 (25 bp)
AGTGCGTGCCCGTGGTCATCGCCGA
LOC_Os04g01930
OsAffx.13617.1.S1_x_at--985--8591Chr04:577798..577822 (25 bp)
TGGTCATCGCCGACGGGTACGCGCT
LOC_Os04g01930
OsAffx.13617.1.S1_x_at--568--2091Chr04:577879..577903 (25 bp)
ACATCCCCAGGCTGAGGGAGAGGCT
LOC_Os04g01930
OsAffx.13617.1.S1_x_at--999--8331Chr04:577951..577975 (25 bp)
GGCTGGTGAAGCGACACCTGATGCT
LOC_Os04g01930
OsAffx.13617.1.S1_x_at--431--5411Chr04:577958..577982 (25 bp)
GAAGCGACACCTGATGCTGCAGCAG
LOC_Os04g01930
OsAffx.13617.1.S1_x_at--290--4151Chr04:577987..578011 (25 bp)
CGCGGAGGCTGGACATGTTCAACAT
LOC_Os04g01930
OsAffx.13617.1.S1_x_at--1128--2493Chr04:578007..578031 (25 bp)
AACATGATCCTGCACTCTGTCTGGC
LOC_Os04g01930
Target Sequence 
GGAGATCAACCTCTACGACGGCGACATGCCGCGGGAGCTCCTGGCGCCGGCGCCGGGGCTGGAGTCCCGCCCGCTCCTCG
CCTTCTTCGCCGGCGGCCGGCACGGGCACGTCCGCGACCTCCTGCTCCGCCACTGGAAGGGACGGGACGCGGCCACGTTC
CCGGTGTACGAGTACGACCTCCCCGCCGCCGGCGACTACTACTCGTTCATGCGGCGCGCGCGCTTCTGCCTGTGCCCGAG
CGGGCACGAGGTGGCGAGCCCGCGGGTGGTGGAGGCGATCCAGGCCGAGTGCGTGCCCGTGGTCATCGCCGACGGGTACG
CGCTGCCGTTCGCCGACGTGCTGCGGTGGGAGGCGTTCTCGGTGGCGGTGGCGGTGGGCGACATCCCCAGGCTGAGGGAG
AGGCTGGAGAGGATACCGGCGGCGGAGGTGGAGCGGCTCCGGCGAGGGGTGAGGCTGGTGAAGCGACACCTGATGCTGCA
GCAGCCGCCGCGGAGGCTGGACATGTTCAACATGATCCTGCACTCTGTCTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13617.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis