Browse Element(s) Details


OsAffx.25830.1.S1_at

Description tigr:9632.m00102
TID=OsAffx.25830.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0198011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01930OsAffx.13617.1.S1_x_at11/114+576481..578063exostosin family protein, putative
LOC_Os04g01930OsAffx.13617.1.S1_at11/114+576481..578063exostosin family protein, putative
LOC_Os04g01930OsAffx.27499.3.S1_x_at1/114+576481..578063exostosin family protein, putative
LOC_Os04g01940OsAffx.25829.1.S1_at11/114+579506..582256hypothetical protein
LOC_Os04g01950Os.51275.1.S1_at11/114+583902..584993expressed protein
LOC_Os04g01960Os.52971.1.S1_at9/114+590515..591421expressed protein
LOC_Os04g01970Os.51839.1.S1_x_at11/114+592840..599416SWIRM domain containing protein, expressed
LOC_Os04g01970Os.49437.1.S1_at1/114+592840..599416SWIRM domain containing protein, expressed
LOC_Os04g01980OsAffx.25830.1.S1_at11/114+600715..603239hypothetical protein
LOC_Os04g01990Os.49158.1.S1_at11/114+604329..606886pentatricopeptide, putative, expressed
LOC_Os04g02000Os.7584.1.S1_at11/114+608054..613392Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os04g02010OsAffx.25831.1.S1_at9/114+617964..618778hypothetical protein
LOC_Os04g02010OsAffx.25831.1.S1_x_at9/114+617964..618778hypothetical protein
LOC_Os04g02020OsAffx.13618.1.S1_at11/114+623838..624134hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25830.1.S1_at--598--9251Chr04:601067..601091 (25 bp)
TCCTCCAGACCGATTCCGAGGAGGT
LOC_Os04g01980
OsAffx.25830.1.S1_at--247--3711Chr04:601275..601299 (25 bp)
CTATGGCGGCAAGATGGAGCGCCTC
LOC_Os04g01980
OsAffx.25830.1.S1_at--33--5291Chr04:603045..603069 (25 bp)
GAAGGAAATTACACTGACATTGTCA
LOC_Os04g01980
OsAffx.25830.1.S1_at--479--371Chr04:603087..603111 (25 bp)
ATCAATATTCCTAACGTCCTTCTTG
LOC_Os04g01980
OsAffx.25830.1.S1_at--711--3651Chr04:603105..603129 (25 bp)
CTTCTTGTCGATGCTATGGGCTTAC
LOC_Os04g01980
OsAffx.25830.1.S1_at--23--811Chr04:603120..603144 (25 bp)
ATGGGCTTACCACTGAGAGATGATC
LOC_Os04g01980
OsAffx.25830.1.S1_at--676--6291Chr04:603138..603162 (25 bp)
GATGATCAATTACACCTCTCTACAG
LOC_Os04g01980
OsAffx.25830.1.S1_at--40--151Chr04:603146..603170 (25 bp)
ATTACACCTCTCTACAGAAGCTCAA
LOC_Os04g01980
OsAffx.25830.1.S1_at--825--9511Chr04:603156..603180 (25 bp)
TCTACAGAAGCTCAACTCCAGCTTG
LOC_Os04g01980
OsAffx.25830.1.S1_at--419--1991Chr04:603170..603194 (25 bp)
ACTCCAGCTTGGTAACATGTTGGCC
LOC_Os04g01980
OsAffx.25830.1.S1_at--927--2091Chr04:603184..603208 (25 bp)
ACATGTTGGCCGAAGCCTATTTAAA
LOC_Os04g01980
Target Sequence 
TCCTCCAGACCGATTCCGAGGAGGTGCTCGGCCTCGTCCCCTGCGCGGTGGGCGGGACCAGGATCTGGATGTGGGCCAGG
GGCCAGCCGCTGTACGAGGCCGCCGTCGCCAGGGCGCGCGCCGCCGTGGCCGACGGCGGCGGCGCGATCGGCGCCGTGCT
GTGGTTCCAGGGGGAGAGCGACACCATCGAGCTCGACGACGCGCGGTCCTATGGCGGCAAGATGGAGCGCCTCGTCGCCG
ATCTCAGGGCCGATCTCCACTTGCCCAATCTGCTCGTCATCCAGGTTGGTCTTGCATCAGGAGAAGGAAATTACACTGAC
ATTGTCAGGGAAGCTCAGAAAAATATCAATATTCCTAACGTCCTTCTTGTCGATGCTATGGGCTTACCACTGAGAGATGA
TCAATTACACCTCTCTACAGAAGCTCAACTCCAGCTTGGTAACATGTTGGCCGAAGCCTATTTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25830.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis