Browse Element(s) Details


OsAffx.13618.1.S1_at

Description tigr:9632.m00106
TID=OsAffx.13618.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0202011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01970Os.51839.1.S1_x_at11/114+592840..599416SWIRM domain containing protein, expressed
LOC_Os04g01970Os.49437.1.S1_at1/114+592840..599416SWIRM domain containing protein, expressed
LOC_Os04g01980OsAffx.25830.1.S1_at11/114+600715..603239hypothetical protein
LOC_Os04g01990Os.49158.1.S1_at11/114+604329..606886pentatricopeptide, putative, expressed
LOC_Os04g02000Os.7584.1.S1_at11/114+608054..613392Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os04g02010OsAffx.25831.1.S1_at9/114+617964..618778hypothetical protein
LOC_Os04g02010OsAffx.25831.1.S1_x_at9/114+617964..618778hypothetical protein
LOC_Os04g02020OsAffx.13618.1.S1_at11/114+623838..624134hypothetical protein
LOC_Os04g02030OsAffx.25832.1.S1_at11/114+630343..633741NB-ARC domain containing protein
LOC_Os04g02040OsAffx.25833.1.S1_at11/114+634634..634948truncated rp1-4 protein, putative
LOC_Os04g02050Os.18856.1.S1_at9/114+636698..640221Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthethase 2, putative, expressed
LOC_Os04g02060OsAffx.25834.1.S1_at11/114+648010..648949hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13618.1.S1_at--758--8451Chr04:623869..623893 (25 bp)
TGGCCACTCTCGCAACTACAGACGA
LOC_Os04g02020
OsAffx.13618.1.S1_at--932--9351Chr04:623878..623902 (25 bp)
TCGCAACTACAGACGATCAGATTGG
LOC_Os04g02020
OsAffx.13618.1.S1_at--9--6451Chr04:623892..623916 (25 bp)
GATCAGATTGGACAGCCGGTCACTC
LOC_Os04g02020
OsAffx.13618.1.S1_at--819--3531Chr04:623942..623966 (25 bp)
CATCCTGCACAGACACAAGAGGAGT
LOC_Os04g02020
OsAffx.13618.1.S1_at--707--8031Chr04:623962..623986 (25 bp)
GGAGTCATTCAATCGATCCGCCAAA
LOC_Os04g02020
OsAffx.13618.1.S1_at--670--6371Chr04:623976..624000 (25 bp)
GATCCGCCAAAGGTTATAGACTATG
LOC_Os04g02020
OsAffx.13618.1.S1_at--452--10031Chr04:623992..624016 (25 bp)
TAGACTATGGAGACACTACTGTAGA
LOC_Os04g02020
OsAffx.13618.1.S1_at--641--5631Chr04:624003..624027 (25 bp)
GACACTACTGTAGATGAGACAATCC
LOC_Os04g02020
OsAffx.13618.1.S1_at--116--5611Chr04:624020..624044 (25 bp)
GACAATCCTATGGTGCAAGCTGAAC
LOC_Os04g02020
OsAffx.13618.1.S1_at--682--6971Chr04:624040..624064 (25 bp)
TGAACGAACAAGAACTGGCGGAAGT
LOC_Os04g02020
OsAffx.13618.1.S1_at--288--5291Chr04:624076..624100 (25 bp)
GAATGGATAAGGTGCTTGATAGCTA
LOC_Os04g02020
Target Sequence 
TGGCCACTCTCGCAACTACAGACGATCAGATTGGACAGCCGGTCACTCCGCAGCCTCCCAACAGCCCTTGCGTCATCCTG
CACAGACACAAGAGGAGTCATTCAATCGATCCGCCAAAGGTTATAGACTATGGAGACACTACTGTAGATGAGACAATCCT
ATGGTGCAAGCTGAACGAACAAGAACTGGCGGAAGTCGGGCCAGGCAGAATGGATAAGGTGCTTGATAGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13618.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis