Browse Element(s) Details


Os.7584.1.S1_at

Description gb:AK065187.1
DB_XREF= gi:32975205
TID=Os.7584.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7584 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002E01, full insert sequence.
FL= gb:AK065187.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0200011/11Zn-finger in Ran binding protein and others containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01950Os.51275.1.S1_at11/114+583902..584993expressed protein
LOC_Os04g01960Os.52971.1.S1_at9/114+590515..591421expressed protein
LOC_Os04g01970Os.51839.1.S1_x_at11/114+592840..599416SWIRM domain containing protein, expressed
LOC_Os04g01970Os.49437.1.S1_at1/114+592840..599416SWIRM domain containing protein, expressed
LOC_Os04g01980OsAffx.25830.1.S1_at11/114+600715..603239hypothetical protein
LOC_Os04g01990Os.49158.1.S1_at11/114+604329..606886pentatricopeptide, putative, expressed
LOC_Os04g02000Os.7584.1.S1_at11/114+608054..613392Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os04g02010OsAffx.25831.1.S1_at9/114+617964..618778hypothetical protein
LOC_Os04g02010OsAffx.25831.1.S1_x_at9/114+617964..618778hypothetical protein
LOC_Os04g02020OsAffx.13618.1.S1_at11/114+623838..624134hypothetical protein
LOC_Os04g02030OsAffx.25832.1.S1_at11/114+630343..633741NB-ARC domain containing protein
LOC_Os04g02040OsAffx.25833.1.S1_at11/114+634634..634948truncated rp1-4 protein, putative
LOC_Os04g02050Os.18856.1.S1_at9/114+636698..640221Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthethase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7584.1.S1_at--678--3071Chr04:609291..609315 (25 bp)
AATCACAACTATGCATCTCGAGCCT
LOC_Os04g02000
Os.7584.1.S1_at--1027--451Chr04:609279..609301 (23 bp)
ATCTCGAGCCTTTTGCAACAGGTGC
LOC_Os04g02000
Os.7584.1.S1_at--855--5551Chr04:608493..608517 (25 bp)
GAAAGAGGCATCAGTTCATCCCGGT
LOC_Os04g02000
Os.7584.1.S1_at--536--10531Chr04:608479..608503 (25 bp)
TTCATCCCGGTGTGTTATAGTTTGC
LOC_Os04g02000
Os.7584.1.S1_at--983--6951Chr04:608437..608461 (25 bp)
GTAGCTTGAAGTTTCCTGGATCTGT
LOC_Os04g02000
Os.7584.1.S1_at--155--5891Chr04:608395..608418 (24 bp)
GAGCGGCCAGGATTTGTTCCCTTTT
LOC_Os04g02000
Os.7584.1.S1_at--51--1611Chr04:608346..608370 (25 bp)
AGCTGCTGTTAAATGTTTGCCCCTC
LOC_Os04g02000
Os.7584.1.S1_at--171--10471Chr04:608315..608339 (25 bp)
TTACCAGCGCGTTCTGTTGAAGTTT
LOC_Os04g02000
Os.7584.1.S1_at--291--4291Chr04:608239..608263 (25 bp)
CCTGCCATCTGGTTCTTTGGGAATA
LOC_Os04g02000
Os.7584.1.S1_at--985--2271Chr04:608142..608166 (25 bp)
AAATGTACCTCCGTGAAGTCTTTGT
LOC_Os04g02000
Os.7584.1.S1_at--253--10551Chr04:608058..608082 (25 bp)
TTCATTCGAAACCTTCCTTTTGCTG
LOC_Os04g02000
Target Sequence 
AATCACAACTATGCATCTCGAGCCTTTTGCAACAGGTGCAAAACTCAGAAAGAGGCATCAGTTCATCCCGGTGTGTTATA
GTTTGCTTGAGANCCTTTGGTATGTAGCTTGAAGTTTCCTGGATCTGTTGTTGGTGATTAGTACCTGAGCGGCCAGGATT
TGTTCCCTTTTGGGGTTTCGATTCCCCAGTGCTTCAGCTGCTGTTAAATGTTTGCCCCTCAGTGCTTTACCAGCGCGTTC
TGTTGAAGTTTGCTATTTATTTTTGTCCGAAGCTTGAATAAAATGGTTCCTCAATGCACCAGCCTGCCATCTGGTTCTTT
GGGAATAATTGAATTAGTTCTTTAGTAATTGGACGATGAACTAGACTCTAATGTTGGGGATTTTATTGCTTTGTGAATCA
AATGTACCTCCGTGAAGTCTTTGTAATCCTGTTTCAGTATTGTTGTATTGAACAGAAAATTGTATGCTGTAATGCACATT
CATTTCATTCGAAACCTTCCTTTTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7584.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis