Browse Element(s) Details


Os.49158.1.S1_at

Description gb:AK103144.1
DB_XREF= gi:32988353
TID=Os.49158.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49158 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033120H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033120H12, full insert sequence.
FL= gb:AK103144.1 gb:AK073722.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0199011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01940OsAffx.25829.1.S1_at11/114+579506..582256hypothetical protein
LOC_Os04g01950Os.51275.1.S1_at11/114+583902..584993expressed protein
LOC_Os04g01960Os.52971.1.S1_at9/114+590515..591421expressed protein
LOC_Os04g01970Os.51839.1.S1_x_at11/114+592840..599416SWIRM domain containing protein, expressed
LOC_Os04g01970Os.49437.1.S1_at1/114+592840..599416SWIRM domain containing protein, expressed
LOC_Os04g01980OsAffx.25830.1.S1_at11/114+600715..603239hypothetical protein
LOC_Os04g01990Os.49158.1.S1_at11/114+604329..606886pentatricopeptide, putative, expressed
LOC_Os04g02000Os.7584.1.S1_at11/114+608054..613392Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os04g02010OsAffx.25831.1.S1_at9/114+617964..618778hypothetical protein
LOC_Os04g02010OsAffx.25831.1.S1_x_at9/114+617964..618778hypothetical protein
LOC_Os04g02020OsAffx.13618.1.S1_at11/114+623838..624134hypothetical protein
LOC_Os04g02030OsAffx.25832.1.S1_at11/114+630343..633741NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49158.1.S1_at--1030--7731Chr04:604820..604844 (25 bp)
GGTGGTGTCAGCTTGATTGGCATAA
LOC_Os04g01990
Os.49158.1.S1_at--715--2091Chr04:604742..604766 (25 bp)
ACATCTTCATCGCTTGATTGCTAGT
LOC_Os04g01990
Os.49158.1.S1_at--892--811Chr04:604716..604740 (25 bp)
ATGGATACATGACACCCTTTTATAG
LOC_Os04g01990
Os.49158.1.S1_at--8--131Chr04:604568..604592 (25 bp)
ATTCAACCTTTTCCCGTGAAGGCAT
LOC_Os04g01990
Os.49158.1.S1_at--460--5291Chr04:604551..604575 (25 bp)
GAAGGCATACTGAGCATTGCACTCA
LOC_Os04g01990
Os.49158.1.S1_at--337--71Chr04:604536..604560 (25 bp)
ATTGCACTCAGGAACCTCTTTCAGA
LOC_Os04g01990
Os.49158.1.S1_at--876--10331Chr04:604495..604519 (25 bp)
TTTACCCTTTTATGTGCTTTCCGTG
LOC_Os04g01990
Os.49158.1.S1_at--1008--4871Chr04:604480..604504 (25 bp)
GCTTTCCGTGCCTTAATGTTTGTCA
LOC_Os04g01990
Os.49158.1.S1_at--368--8271Chr04:604445..604469 (25 bp)
GGCATGGGCACAAGCACATTCTTTA
LOC_Os04g01990
Os.49158.1.S1_at--1018--251Chr04:604360..604384 (25 bp)
ATATGCCACTACTATTGACGTTATC
LOC_Os04g01990
Os.49158.1.S1_at--650--10751Chr04:604346..604370 (25 bp)
TTGACGTTATCTATTGGTGCCACTA
LOC_Os04g01990
Target Sequence 
GGTGGTGTCAGCTTGATTGGCATAAGAGGAGACAATCTAGTCGGATAAAGACCTTTGAGGGAGATNGANTAGATTAATAC
ATCTTCATCGCTTGATTGCTAGTAATGGATACATGACACCCTTTTATAGNGCATGGCTTTGACTGGACAGCTGATACATG
GAATAATAATCTCTGCTCAACAGCTGATGAAATTTCTTTTAACTTCGTCAATTTGAAGCGACGAAAGAATGTTGAAGCTA
GTTTACACATGCATTCAACCTTTTCCCGTGAAGGCATACTGAGCATTGCACTCAGGAACCTCTTTCAGATTTTTTTAGTG
TATTATTTACCCTTTTATGTGCTTTCCGTGCCTTAATGTTTGTCAGAGTGTTGATGGCATGGGCACAAGCACATTCTTTA
TTTGTTTTGTTTTCAAGGGTTAATTTGATCCATGCCACTGCAAATGTGGCAAATCAAAAAATATGCCACTACTATTGACG
TTATCTATTGGTGCCACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49158.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis