Browse Element(s) Details


Os.51275.1.S1_at

Description gb:AK062396.1
DB_XREF= gi:32972414
TID=Os.51275.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51275 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-102-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-D08, full insert sequence.
FL= gb:AK062396.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0195011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01910Os.51154.1.S1_at11/114+559389..560725expressed protein
LOC_Os04g01920NANA4+561017..561304hypothetical protein
LOC_Os04g01930OsAffx.13617.1.S1_x_at11/114+576481..578063exostosin family protein, putative
LOC_Os04g01930OsAffx.13617.1.S1_at11/114+576481..578063exostosin family protein, putative
LOC_Os04g01930OsAffx.27499.3.S1_x_at1/114+576481..578063exostosin family protein, putative
LOC_Os04g01940OsAffx.25829.1.S1_at11/114+579506..582256hypothetical protein
LOC_Os04g01950Os.51275.1.S1_at11/114+583902..584993expressed protein
LOC_Os04g01960Os.52971.1.S1_at9/114+590515..591421expressed protein
LOC_Os04g01970Os.51839.1.S1_x_at11/114+592840..599416SWIRM domain containing protein, expressed
LOC_Os04g01970Os.49437.1.S1_at1/114+592840..599416SWIRM domain containing protein, expressed
LOC_Os04g01980OsAffx.25830.1.S1_at11/114+600715..603239hypothetical protein
LOC_Os04g01990Os.49158.1.S1_at11/114+604329..606886pentatricopeptide, putative, expressed
LOC_Os04g02000Os.7584.1.S1_at11/114+608054..613392Zn-finger in Ran binding protein and others containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51275.1.S1_at--176--1931Chr04:584471..584495 (25 bp)
ACGGTGAAGTCCTACGGCAGAGAGT
LOC_Os04g01950
Os.51275.1.S1_at--299--5051Chr04:584389..584413 (25 bp)
GCAGCACGGTGTGGATCCAGTACGA
LOC_Os04g01950
Os.51275.1.S1_at--1107--3891Chr04:584069..584093 (25 bp)
CTGGTGTGTCGCTTTGTGCGCAAGC
LOC_Os04g01950
Os.51275.1.S1_at--549--10811Chr04:584056..584080 (25 bp)
TTGTGCGCAAGCGACGACACACGGA
LOC_Os04g01950
Os.51275.1.S1_at--460--5631Chr04:584041..584065 (25 bp)
GACACACGGAACCTAAGCACTAGTA
LOC_Os04g01950
Os.51275.1.S1_at--199--7751Chr04:583991..584015 (25 bp)
GGTGTATAAGCTTGTACGTTAACTA
LOC_Os04g01950
Os.51275.1.S1_at--491--3591Chr04:583981..584005 (25 bp)
CTTGTACGTTAACTAGCTTATTTCG
LOC_Os04g01950
Os.51275.1.S1_at--151--10311Chr04:583961..583985 (25 bp)
TTTCGTTTTCAATATTTCCTCATCT
LOC_Os04g01950
Os.51275.1.S1_at--233--10671Chr04:583946..583970 (25 bp)
TTCCTCATCTTTCTACGGATTTGTT
LOC_Os04g01950
Os.51275.1.S1_at--927--6791Chr04:583924..583948 (25 bp)
GTTATATATAGACTTCCTGCGACAG
LOC_Os04g01950
Os.51275.1.S1_at--410--5691Chr04:583914..583938 (25 bp)
GACTTCCTGCGACAGAAAATTGGAT
LOC_Os04g01950
Target Sequence 
ACGGTGAAGTCCTACGGCAGAGAGTCCCCCGACGTCGGCCTCAACGTCACCGTCACGCCAAACCGCACTACGGCGCCGAG
CGGCAGCACGGTGTGGATCCAGTACGACGCCGTCGAGCACCGCCTGTCGGTGCACGTCGCCGCCGCCGGCGAGCCACGGC
CATCTAATGCCCTCCTCGACGTGCCGCTATACCTCGCCGGCGGGCGCACCACCCAGACCGCGCTCGTCGGCTTCTTTGGC
GGGACGATCGGGGATATCATCGTCGGCGTCCGTGGCTGGGAGCTGACCGTGGAGAGGTTGCGCGGCGATGACGGCGGCGG
GGGGAAGAAGAGGACGTCGTGGGTGGTGATACTGCTGGCGGTGGTCGGGTCGGTGGCGGGCGTGGCGGCCATGGTGTCCG
TGCTGGTGTGTCGCTTTGTGCGCAAGCGACGACACACGGAACCTAAGCACTAGTATCATATTCATATAGGACTATGTATA
GGTGTATAAGCTTGTACGTTAACTAGCTTATTTCGTTTTCAATATTTCCTCATCTTTCTACGGATTTGTTATATATAGAC
TTCCTGCGACAGAAAATTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51275.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis