Browse Element(s) Details


OsAffx.25828.1.S1_at

Description tigr:9632.m00093
TID=OsAffx.25828.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to lectin-like protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0189011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01850OsAffx.25936.1.S1_s_at10/114+527905..528397hypothetical protein
LOC_Os04g01850OsAffx.25936.7.S1_s_at9/114+527905..528397hypothetical protein
LOC_Os04g01860Os.52257.1.S1_at3/114+532305..532958lectin protein kinase family protein, putative
LOC_Os04g01874Os.52257.1.S1_at11/114+536282..544079Protein kinase domain containing protein, expressed
LOC_Os04g01890OsAffx.25828.1.S1_at11/114+551025..553022Protein kinase domain containing protein
LOC_Os04g01900NANA4+557063..557893transposon protein, putative, unclassified
LOC_Os04g01910Os.51154.1.S1_at11/114+559389..560725expressed protein
LOC_Os04g01920NANA4+561017..561304hypothetical protein
LOC_Os04g01930OsAffx.13617.1.S1_x_at11/114+576481..578063exostosin family protein, putative
LOC_Os04g01930OsAffx.13617.1.S1_at11/114+576481..578063exostosin family protein, putative
LOC_Os04g01930OsAffx.27499.3.S1_x_at1/114+576481..578063exostosin family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25828.1.S1_at--798--3371Chr04:552447..552471 (25 bp)
CACCACGAGCTAGAGGACATCAAGT
LOC_Os04g01890
OsAffx.25828.1.S1_at--580--9091Chr04:552484..552508 (25 bp)
TGCTCGACCAAGAATTCCGTGCCTG
LOC_Os04g01890
OsAffx.25828.1.S1_at--731--4071Chr04:552635..552659 (25 bp)
CGACGTGTACGCGTTTGGAGCCCTC
LOC_Os04g01890
OsAffx.25828.1.S1_at--796--9411Chr04:552658..552682 (25 bp)
TCGTCCTTGAGATCGTCACCGGTAG
LOC_Os04g01890
OsAffx.25828.1.S1_at--487--7071Chr04:552672..552696 (25 bp)
GTCACCGGTAGGAAGGCACTCGATC
LOC_Os04g01890
OsAffx.25828.1.S1_at--1008--3911Chr04:552702..552726 (25 bp)
CGGCCCAGTGACTCAGTGCTGATCG
LOC_Os04g01890
OsAffx.25828.1.S1_at--619--1111Chr04:552716..552740 (25 bp)
AGTGCTGATCGCTAACTGGGTACGG
LOC_Os04g01890
OsAffx.25828.1.S1_at--664--51Chr04:552746..552770 (25 bp)
ATTCCACAATAACGGCAAGCTGCTG
LOC_Os04g01890
OsAffx.25828.1.S1_at--625--8311Chr04:552835..552859 (25 bp)
GGCTACTTCTCCTTGGCTTATCGTG
LOC_Os04g01890
OsAffx.25828.1.S1_at--37--3651Chr04:552874..552898 (25 bp)
CTTCAGACCGGCCAAGCATGGAGAT
LOC_Os04g01890
OsAffx.25828.1.S1_at--769--811Chr04:552897..552921 (25 bp)
ATGGTCGTGCAGATCGTTGCCAAGC
LOC_Os04g01890
Target Sequence 
CACCACGAGCTAGAGGACATCAAGTCCAGCAACATCCTGCTCGACCAAGAATTCCGTGCCTGCCTCGGAGACTTCGGCCT
TGCCCGCGTCATCTCCGGTGGCAGGAGCTCCGCTTCAATGGAGCTCGCCGGCACCAGGGGTTTCATAGCGCCGGAGTACG
CGCAGAATCGGGTGGCGACGCGGCGGACCGACGTGTACGCGTTTGGAGCCCTCGTCCTTGAGATCGTCACCGGTAGGAAG
GCACTCGATCACTCCCGGCCCAGTGACTCAGTGCTGATCGCTAACTGGGTACGGGATGAATTCCACAATAACGGCAAGCT
GCTGGAAGCCGTGGACGGCAGCCTCACCACGGAGGAAGGTCTCCAGTACGATGCCGACGACGCAGAACGGCTACTTCTCC
TTGGCTTATCGTGCACCAGCCACAGCGCTTCAGACCGGCCAAGCATGGAGATGGTCGTGCAGATCGTTGCCAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25828.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis