Browse Element(s) Details


Os.52257.1.S1_at

Description gb:AK065935.1
DB_XREF= gi:32975953
TID=Os.52257.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52257 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013044A22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013044A22, full insert sequence.
FL= gb:AK065935.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0187411/11Protein kinase domain containing protein, expressed
LOC_Os04g018603/11lectin protein kinase family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01810OsAffx.25825.1.S1_at11/114+510720..515159Terpene synthase, N-terminal domain containing protein, expressed
LOC_Os04g01820Os.10827.1.S1_x_at10/114+515910..519698transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g01820Os.46055.2.S1_x_at5/114+515910..519698transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g01830NANA4+519882..520543hypothetical protein
LOC_Os04g01840OsAffx.25936.2.S1_x_at2/114+522420..524829transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g01850OsAffx.25936.1.S1_s_at10/114+527905..528397hypothetical protein
LOC_Os04g01850OsAffx.25936.7.S1_s_at9/114+527905..528397hypothetical protein
LOC_Os04g01860Os.52257.1.S1_at3/114+532305..532958lectin protein kinase family protein, putative
LOC_Os04g01874Os.52257.1.S1_at11/114+536282..544079Protein kinase domain containing protein, expressed
LOC_Os04g01890OsAffx.25828.1.S1_at11/114+551025..553022Protein kinase domain containing protein
LOC_Os04g01900NANA4+557063..557893transposon protein, putative, unclassified
LOC_Os04g01910Os.51154.1.S1_at11/114+559389..560725expressed protein
LOC_Os04g01920NANA4+561017..561304hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52257.1.S1_at--305--5011Chr04:536787..536811 (25 bp)
GCAGGCGAGCTCTCTGCAAGTTCCA
LOC_Os04g01874
Os.52257.1.S1_at--568--7212Chr04:536743..536767 (25 bp)
GTCGACTGGGTCTGGAGGCTTCACC
LOC_Os04g01874
Os.52257.1.S1_at--508--5811Chr04:536701..536725 (25 bp)
GACGCCGTCGACAATGGCATTGCTT
LOC_Os04g01874
Os.52257.1.S1_at--500--8291Chr04:536686..536710 (25 bp)
GGCATTGCTTCTTCTACCGAAGAGT
LOC_Os04g01874
Os.52257.1.S1_at--324--6352Chr04:536659..536683 (25 bp)
GATGCGGATGATGCCATTCGGTTGC
LOC_Os04g01874
Os.52257.1.S1_at--940--6292Chr04:536653..536677 (25 bp)
GATGATGCCATTCGGTTGCTGCTGC
LOC_Os04g01874
Os.52257.1.S1_at--259--7511Chr04:536485..536509 (25 bp)
GTGGACTCTGATGACGTCGACTCGT
LOC_Os04g01874
Os.52257.1.S1_at--986--4051Chr04:536453..536477 (25 bp)
CGATGTCTATGCGAGTTTGTGTGAA
LOC_Os04g01874
Os.52257.1.S1_at--312--611Chr04:536400..536424 (25 bp)
ATGCCCTTGCGGTGAGAGTTTCATC
LOC_Os04g01874
Os.52257.1.S1_at--1123--3471Chr04:536376..536400 (25 bp)
CAGGATATCACTAGGAGCAAGGCGT
LOC_Os04g01874
Os.52257.1.S1_at--61--5171Chr04:536360..536384 (25 bp)
GCAAGGCGTGGGTCGTTGTTAATTA
LOC_Os04g01874
Target Sequence 
GCAGGCGAGCTCTCTGCAAGTTCCAGGGGACGTTCCAGCTGCTCGTCGACTGGGTCTGGAGGCTTCACCGGGAGGGGAGC
CTGCTCGACGCCGTCGACAATGGCATTGCTTCTTCTACCGAAGAGTTTGATGCGGATGATGCCATTCGGTTGCTGCTGCT
TGGGCTGGCGTGCAGCAACCCGAACCCGTCGGACCGGCCGAGCATGACGGAGGTGGTGCAGGTGGTCGCCAGGTCGGCGG
CGCCACCGGATGTGCCGCCCGTGAAGCCGGCGTTCGTGTGGCCGCCCGAGGGTGGGGTGGAGGTGGACTCTGATGACGTC
GACTCGTCGGGGAGCGATGTCTATGCGAGTTTGTGTGAATGGGAGGAAGAGGAGACGTCGAGCAGCGATGCCCTTGCGGT
GAGAGTTTCATCAGGATATCACTAGGAGCAAGGCGTGGGTCGTTGTTAATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52257.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis