Browse Element(s) Details

Os.15663.1.S1_at

Description

gb:NM_185692.1
DB_XREF= gi:34898469
TID=Os.15663.1
CNT=7
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.15663 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs D47168(S12332),D46350(S10967) correspond to a region of the predicted gene.~Similar to Prunus armeniaca ethylene-forming-enzyme-like dioxygenase. (U97530) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) ESTs D47168(S12332),D46350(S10967) correspond to a region of the predicted gene.~Similar to Prunus armeniaca ethylene-forming-enzyme-like dioxygenase. (U97530) (Gene), mRNA.
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g08032	5/11	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g07932	5/11	oxidoreductase, 2OG-Fe oxygenase family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g07978	Os.4216.1.S1_a_at	11/11	6	+	3869165..3869917	Proteasome subunit alpha type 4, putative
LOC_Os06g07978	Os.4216.2.S1_x_at	6/11	6	+	3869165..3869917	Proteasome subunit alpha type 4, putative
LOC_Os06g07978	Os.4216.1.S1_at	1/11	6	+	3869165..3869917	Proteasome subunit alpha type 4, putative
LOC_Os06g07987	OsAffx.27499.3.S1_x_at	11/11	6	+	3871356..3873570	Exostosin family protein
LOC_Os06g07987	OsAffx.13617.1.S1_x_at	2/11	6	+	3871356..3873570	Exostosin family protein
LOC_Os06g07987	Os.51833.1.S1_x_at	1/11	6	+	3871356..3873570	Exostosin family protein
LOC_Os06g07996	OsAffx.27499.2.S1_at	11/11	6	+	3874485..3877204	ribosomal protein S15 containing protein
LOC_Os06g08005	Os.4754.1.S1_at	11/11	6	+	3877872..3882078	galactosyltransferase family protein, putative, expressed
LOC_Os06g08014	OsAffx.22569.2.S1_x_at	11/11	6	+	3883193..3884868	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08014	OsAffx.22569.2.S1_at	11/11	6	+	3883193..3884868	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08014	OsAffx.22569.1.S1_x_at	7/11	6	+	3883193..3884868	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08023	Os.27542.1.A1_at	11/11	6	+	3888191..3891360	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08023	Os.20904.1.S1_at	8/11	6	+	3888191..3891360	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08023	OsAffx.19206.1.S1_x_at	2/11	6	+	3888191..3891360	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08032	Os.15663.1.S1_at	5/11	6	+	3892673..3894157	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08041	Os.27693.1.S1_at	11/11	6	+	3895491..3897525	iron/ascorbate-dependent oxidoreductase, putative
LOC_Os06g08041	OsAffx.22569.1.S1_x_at	1/11	6	+	3895491..3897525	iron/ascorbate-dependent oxidoreductase, putative
LOC_Os06g08060	Os.54275.1.S1_at	11/11	6	+	3899489..3902057	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g08070	Os.41695.15.S1_s_at	11/11	6	+	3902683..3909686	transposon protein, putative, Mutator sub-class
LOC_Os06g08070	Os.41695.5.S1_x_at	8/11	6	+	3902683..3909686	transposon protein, putative, Mutator sub-class
LOC_Os06g08070	Os.41695.2.S1_x_at	4/11	6	+	3902683..3909686	transposon protein, putative, Mutator sub-class
LOC_Os06g08070	Os.41695.3.S1_x_at	4/11	6	+	3902683..3909686	transposon protein, putative, Mutator sub-class
LOC_Os06g08070	Os.41695.4.S1_x_at	3/11	6	+	3902683..3909686	transposon protein, putative, Mutator sub-class
LOC_Os06g08080	Os.167.1.S1_at	11/11	6	+	3918533..3926284	Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os06g08080	Os.55953.1.S1_at	1/11	6	+	3918533..3926284	Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0009813	biological_process	flavonoid biosynthesis
GO:0010261	biological_process	organ senescence (sensu Magnoliophyta)
GO:0016682	molecular_function	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
GO:0016706	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.15663.1.S1_at--185--1033	2	Chr06:3893675..3893699 (25 bp)	TTTACGATTCTTCTCGTCGACGAAG	LOC_Os06g08032
Os.15663.1.S1_at--74--941	3	Chr08:8764809..8764842 (25 bp)	TCGTCGACGAAGATGTCGGTGGCCT	NONE
Os.15663.1.S1_at--387--943	2	Chr06:3893703..3893727 (25 bp)	TCGGTGGCCTGCAAATTCAGAGGGA	LOC_Os06g08032
Os.15663.1.S1_at--7--751	2	Chr06:3893734..3893758 (25 bp)	GTGGTACAATGTTCAGGTCACTCCC	LOC_Os06g08032
Os.15663.1.S1_at--1092--641	2	Chr06:3893980..3894004 (25 bp)	GATCTCACTGGCCATGTTTTACAGT	LOC_Os06g08032
Os.15663.1.S1_at--532--95	1	NONE	AGGAAACAGCTACGGCTGCACGCAG	NONE
Os.15663.1.S1_at--935--509	2	Chr06:3894895..3894919 (25 bp)	GCACGCAGCACGCTACAGCGATTTT	NONE
Os.15663.1.S1_at--975--163	3	Chr10:936696..936717 (22 bp)	AGCGATTTTCAACTGCTGCAGCCAC	NONE
Os.15663.1.S1_at--298--239	2	Chr06:3894949..3894973 (25 bp)	AAACTGGCTGCCGAACAAGGCCAAT	NONE
Os.15663.1.S1_at--1111--345	2	Chr06:3894997..3895021 (25 bp)	CAGTGATGTAAAGCTCAACGACCCA	NONE
Os.15663.1.S1_at--387--571	2	Chr06:3895016..3895040 (25 bp)	GACCCATACCATATTACTGCCGGAG	NONE

Target Sequence

TTTACGATTCTTCTCGTCGACGAAGATGTCGGTGGCCTGCAAATTCAGAGGGATGGCAAGTGGTACAATGTTCAGGTCAC
TCCCNACACATTGCTGATCAACTTAGGTGACACCATGGAGGTATTGTGCAATGGCATCTTCAGGAGCCCAGTGCACAGGG
TGGTGACAAACGCCGAGAGGGAGAGGATCTCACTGGCCATGTTTTACAGTGTGAATGATGAGAAAGATATTGGGCCGGCG
GCTGGTTTGCTGGATGAGAATCGGCCTGCAAGATACAGGAAACAGCTACGGCTGCACGCAGCACGCTACAGCGATTTTCA
ACTGCTGCAGCCACAGCAGCTGCAGCAAAACTGGCTGCCGAACAAGGCCAATGGGCTCGGCAGACAAACATTTGACAGTG
ATGTAAAGCTCAACGACCCATACCATATTACTGCCGGAG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis