Browse Element(s) Details

Os.54275.1.S1_at

Description

gb:AK102979.1
DB_XREF= gi:32988188
TID=Os.54275.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54275 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033115N23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033115N23, full insert sequence.
FL= gb:AK102979.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g08060	11/11	oxidoreductase, 2OG-Fe oxygenase family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g07996	OsAffx.27499.2.S1_at	11/11	6	+	3874485..3877204	ribosomal protein S15 containing protein
LOC_Os06g08005	Os.4754.1.S1_at	11/11	6	+	3877872..3882078	galactosyltransferase family protein, putative, expressed
LOC_Os06g08014	OsAffx.22569.2.S1_x_at	11/11	6	+	3883193..3884868	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08014	OsAffx.22569.2.S1_at	11/11	6	+	3883193..3884868	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08014	OsAffx.22569.1.S1_x_at	7/11	6	+	3883193..3884868	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08023	Os.27542.1.A1_at	11/11	6	+	3888191..3891360	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08023	Os.20904.1.S1_at	8/11	6	+	3888191..3891360	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08023	OsAffx.19206.1.S1_x_at	2/11	6	+	3888191..3891360	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08032	Os.15663.1.S1_at	5/11	6	+	3892673..3894157	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08041	Os.27693.1.S1_at	11/11	6	+	3895491..3897525	iron/ascorbate-dependent oxidoreductase, putative
LOC_Os06g08041	OsAffx.22569.1.S1_x_at	1/11	6	+	3895491..3897525	iron/ascorbate-dependent oxidoreductase, putative
LOC_Os06g08060	Os.54275.1.S1_at	11/11	6	+	3899489..3902057	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g08070	Os.41695.15.S1_s_at	11/11	6	+	3902683..3909686	transposon protein, putative, Mutator sub-class
LOC_Os06g08070	Os.41695.5.S1_x_at	8/11	6	+	3902683..3909686	transposon protein, putative, Mutator sub-class
LOC_Os06g08070	Os.41695.2.S1_x_at	4/11	6	+	3902683..3909686	transposon protein, putative, Mutator sub-class
LOC_Os06g08070	Os.41695.3.S1_x_at	4/11	6	+	3902683..3909686	transposon protein, putative, Mutator sub-class
LOC_Os06g08070	Os.41695.4.S1_x_at	3/11	6	+	3902683..3909686	transposon protein, putative, Mutator sub-class
LOC_Os06g08080	Os.167.1.S1_at	11/11	6	+	3918533..3926284	Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os06g08080	Os.55953.1.S1_at	1/11	6	+	3918533..3926284	Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os06g08090	Os.27371.1.A1_at	11/11	6	+	3923743..3926917	Heparanase-like protein 3 precursor, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0009813	biological_process	flavonoid biosynthesis
GO:0016706	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.54275.1.S1_at--1041--343	1	Chr06:3901214..3901238 (25 bp)	CAGATTCAACTACTACTCTCCTTGT	LOC_Os06g08060
Os.54275.1.S1_at--188--583	1	Chr06:3901243..3901267 (25 bp)	GACCTGATCTTGTGTTAGGCCTGAA	LOC_Os06g08060
Os.54275.1.S1_at--1155--967	1	Chr06:3901291..3901315 (25 bp)	TCACCGTTCTTCTCACTGACAAAGA	LOC_Os06g08060
Os.54275.1.S1_at--386--943	1	Chr06:3901318..3901342 (25 bp)	TCGGTGGCCTGCAAGTTCTTAGAGA	LOC_Os06g08060
Os.54275.1.S1_at--707--741	1	Chr06:3901357..3901381 (25 bp)	GTGTTCCAGCTGTGCGAGATTACTC	LOC_Os06g08060
Os.54275.1.S1_at--707--605	1	Chr06:3901372..3901396 (25 bp)	GAGATTACTCTCTTCTGATTAACAT	LOC_Os06g08060
Os.54275.1.S1_at--363--69	1	Chr06:3901672..3901696 (25 bp)	ATGACCAATGGGACCTTCAGGGCTC	LOC_Os06g08060
Os.54275.1.S1_at--1038--365	1	Chr06:3901686..3901710 (25 bp)	CTTCAGGGCTCCATTGCATAGGGTG	LOC_Os06g08060
Os.54275.1.S1_at--518--755	1	Chr06:3901741..3901765 (25 bp)	GTGGCCATGTTCTACGCTGTGGATG	LOC_Os06g08060
Os.54275.1.S1_at--1084--63	1	Chr06:3901865..3901889 (25 bp)	ATGAACATTTCTCTCGTGGTGGTAG	LOC_Os06g08060
Os.54275.1.S1_at--583--975	1	Chr06:3902018..3902042 (25 bp)	TAATGGTACTTTTTCGTCTATACGA	LOC_Os06g08060

Target Sequence

CAGATTCAACTACTACTCTCCTTGTCCAAGACCTGATCTTGTGTTAGGCCTGAAGCCTCACTCTGACCTCTGTGCTCTCA
CCGTTCTTCTCACTGACAAAGAAGTCGGTGGCCTGCAAGTTCTTAGAGATGGAACATGGTACAGTGTTCCAGCTGTGCGA
GATTACTCTCTTCTGATTAACATTGGTGTTACACTGGAGATAATGACCAATGGGACCTTCAGGGCTCCATTGCATAGGGT
GGTGACAAATGCAGAGAGGGAGAGAATGTCGGTGGCCATGTTCTACGCTGTGGATGGCGAGAAGGAGATAGAGCCGGTGG
CTGAGCTGCTGGGGCTGAAGCAACAATCAGCACGGTACAGGGGAATCAAGGGCAAGGACTTGTTGATTGGACACTATGAA
CATTTCTCTCGTGGTGGTAGAGTTGTCGATTCATTGAAGATCTAACGAAGGGTAACCGCAAAGAGTGCTATTAGTACTAC
TGTACTCTCTACATAGATAATATTATACTACTTGTAAAAACTATATGAGCCATCGATTTAGTAGGCTATAATGGTACTTT
TTCGTCTATACGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis