Browse Element(s) Details

Os.55953.1.S1_at

Description

gb:AK109044.1
DB_XREF= gi:32994253
TID=Os.55953.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55953 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-154-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-154-D06, full insert sequence.
FL= gb:AK109044.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g08080	1/11	Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g08032	Os.15663.1.S1_at	5/11	6	+	3892673..3894157	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08041	Os.27693.1.S1_at	11/11	6	+	3895491..3897525	iron/ascorbate-dependent oxidoreductase, putative
LOC_Os06g08041	OsAffx.22569.1.S1_x_at	1/11	6	+	3895491..3897525	iron/ascorbate-dependent oxidoreductase, putative
LOC_Os06g08060	Os.54275.1.S1_at	11/11	6	+	3899489..3902057	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g08070	Os.41695.15.S1_s_at	11/11	6	+	3902683..3909686	transposon protein, putative, Mutator sub-class
LOC_Os06g08070	Os.41695.5.S1_x_at	8/11	6	+	3902683..3909686	transposon protein, putative, Mutator sub-class
LOC_Os06g08070	Os.41695.2.S1_x_at	4/11	6	+	3902683..3909686	transposon protein, putative, Mutator sub-class
LOC_Os06g08070	Os.41695.3.S1_x_at	4/11	6	+	3902683..3909686	transposon protein, putative, Mutator sub-class
LOC_Os06g08070	Os.41695.4.S1_x_at	3/11	6	+	3902683..3909686	transposon protein, putative, Mutator sub-class
LOC_Os06g08080	Os.167.1.S1_at	11/11	6	+	3918533..3926284	Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os06g08080	Os.55953.1.S1_at	1/11	6	+	3918533..3926284	Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os06g08090	Os.27371.1.A1_at	11/11	6	+	3923743..3926917	Heparanase-like protein 3 precursor, putative, expressed
LOC_Os06g08100	NA	NA	6	+	3931093..3931803	hypothetical protein
LOC_Os06g08110	Os.53987.1.S1_at	11/11	6	+	3933042..3936230	nodulin, putative, expressed
LOC_Os06g08120	OsAffx.16867.1.S1_at	1/11	6	+	3940688..3942448	expressed protein
LOC_Os06g08120	Os.25011.1.A1_at	1/11	6	+	3940688..3942448	expressed protein
LOC_Os06g08130	OsAffx.4762.1.S1_at	10/11	6	+	3945826..3946219	hypothetical protein
LOC_Os06g08140	Os.17303.1.S1_at	11/11	6	+	3946928..3951246	Protein phosphatase 2C containing protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0009926	biological_process	auxin polar transport
GO:0010248	biological_process	establishment and/or maintenance of transmembrane electrochemical gradient
GO:0005739	cellular_component	mitochondrion
GO:0005794	cellular_component	Golgi apparatus
GO:0005886	cellular_component	plasma membrane
GO:0009705	cellular_component	vacuolar membrane (sensu Magnoliophyta)
GO:0010008	cellular_component	endosome membrane
GO:0009678	molecular_function	hydrogen-translocating pyrophosphatase activity
GO:0016887	molecular_function	ATPase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.55953.1.S1_at--1016--129	1	NONE	AGATGCAATTCAGCGACTTCCAGAA	NONE
Os.55953.1.S1_at--986--55	1	NONE	ATCCTGGGCAACCTAGCAGCGAGTG	NONE
Os.55953.1.S1_at--1136--491	1	NONE	GCTTGACGTGATGGCGCCTATACTC	NONE
Os.55953.1.S1_at--1080--189	1	NONE	ACGTGCAGGCGAGGCTCATCGAGCA	NONE
Os.55953.1.S1_at--508--143	1	NONE	AGAACGAGCACGAGTTGCGTCAGAC	NONE
Os.55953.1.S1_at--595--37	1	NONE	ATCACGACGCCGCAGTTTAAGAAGG	NONE
Os.55953.1.S1_at--228--147	1	Chr06:3926089..3926108 (20 bp)	AGAAGGCGTTGAGCTCGTCCTGCAT	LOC_Os06g08080
Os.55953.1.S1_at--557--123	1	NONE	AGTTCGATCTGCCTGATGAGGTCTC	NONE
Os.55953.1.S1_at--231--307	1	NONE	AATCTAGAGGCGTTTGCCAAGGCTA	NONE
Os.55953.1.S1_at--385--439	1	NONE	CCAAGGCTATGGAGGCTCATGCTAA	NONE
Os.55953.1.S1_at--766--299	1	NONE	AATGATGACGATGCTATGGACACTA	NONE

Target Sequence

AGATGCAATTCAGCGACTTCCAGAACATCCTGGGCAACCTAGCAGCGAGTGGCGGCGGACGATCGGACCTCGACCTGTCG
GACGTGCTCACGCTTGACGTGATGGCGCCTATACTCAGCAACAAGGACGTGCAGGCGAGGCTCATCGAGCACTTGCCCGA
GTCGCCCGACATTCTCGCCAAGAACGAGCACGAGTTGCGTCAGACCATCACGACGCCGCAGTTTAAGAAGGCGTTGAGCT
CGTCCTGCATGGCCTTGCAGAGCGGACAGCTCGGGCCTGTCTTCAAGCAGTTCGATCTGCCTGATGAGGTCTCCAATGCT
GCTGCTCAAGGCAATCTAGAGGCGTTTGCCAAGGCTATGGAGGCTCATGCTAAGAAGGCCAAGAAGGCTAATGATGACGA
TGCTATGGACACTA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis