Browse Element(s) Details

Os.53987.1.S1_at

Description

gb:AK101156.1
DB_XREF= gi:32986365
TID=Os.53987.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53987 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033027I22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033027I22, full insert sequence.
FL= gb:AK101156.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g08110	11/11	nodulin, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g08070	Os.41695.15.S1_s_at	11/11	6	+	3902683..3909686	transposon protein, putative, Mutator sub-class
LOC_Os06g08070	Os.41695.5.S1_x_at	8/11	6	+	3902683..3909686	transposon protein, putative, Mutator sub-class
LOC_Os06g08070	Os.41695.2.S1_x_at	4/11	6	+	3902683..3909686	transposon protein, putative, Mutator sub-class
LOC_Os06g08070	Os.41695.3.S1_x_at	4/11	6	+	3902683..3909686	transposon protein, putative, Mutator sub-class
LOC_Os06g08070	Os.41695.4.S1_x_at	3/11	6	+	3902683..3909686	transposon protein, putative, Mutator sub-class
LOC_Os06g08080	Os.167.1.S1_at	11/11	6	+	3918533..3926284	Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os06g08080	Os.55953.1.S1_at	1/11	6	+	3918533..3926284	Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os06g08090	Os.27371.1.A1_at	11/11	6	+	3923743..3926917	Heparanase-like protein 3 precursor, putative, expressed
LOC_Os06g08100	NA	NA	6	+	3931093..3931803	hypothetical protein
LOC_Os06g08110	Os.53987.1.S1_at	11/11	6	+	3933042..3936230	nodulin, putative, expressed
LOC_Os06g08120	OsAffx.16867.1.S1_at	1/11	6	+	3940688..3942448	expressed protein
LOC_Os06g08120	Os.25011.1.A1_at	1/11	6	+	3940688..3942448	expressed protein
LOC_Os06g08130	OsAffx.4762.1.S1_at	10/11	6	+	3945826..3946219	hypothetical protein
LOC_Os06g08140	Os.17303.1.S1_at	11/11	6	+	3946928..3951246	Protein phosphatase 2C containing protein, expressed
LOC_Os06g08154	Os.50451.1.S1_at	11/11	6	+	3955914..3960587	Leucine Rich Repeat family protein, expressed
LOC_Os06g08154	Os.50451.2.S1_at	11/11	6	+	3955914..3960587	Leucine Rich Repeat family protein, expressed
LOC_Os06g08154	Os.51075.1.S1_x_at	1/11	6	+	3955914..3960587	Leucine Rich Repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.53987.1.S1_at--691--839	1	Chr06:3933598..3933622 (25 bp)	GGCGCACTCTTGTTTAACAGTCTCG	LOC_Os06g08110
Os.53987.1.S1_at--507--601	1	Chr06:3933547..3933571 (25 bp)	GAGAGACAGCATGCCACAACAATGG	LOC_Os06g08110
Os.53987.1.S1_at--1105--813	1	Chr06:3933524..3933548 (25 bp)	GGACACTGACATTGCATGCCATGGC	LOC_Os06g08110
Os.53987.1.S1_at--363--919	1	Chr06:3933508..3933532 (25 bp)	TGCCATGGCCCTAATTGTTTCAGAC	LOC_Os06g08110
Os.53987.1.S1_at--640--569	1	Chr06:3933486..3933510 (25 bp)	GACTTACATTTTGCGTTCTAGCTGG	LOC_Os06g08110
Os.53987.1.S1_at--56--487	1	Chr06:3933457..3933481 (25 bp)	GCTAGCTTGGGTACATTGCTGAGCA	LOC_Os06g08110
Os.53987.1.S1_at--429--565	1	Chr06:3933425..3933449 (25 bp)	GACAGTGAGAATCCGACCAGTATAT	LOC_Os06g08110
Os.53987.1.S1_at--925--751	1	Chr06:3933384..3933408 (25 bp)	GTGGATCCTTCAGCCAGCCGAGGAG	LOC_Os06g08110
Os.53987.1.S1_at--681--293	1	Chr06:3933344..3933368 (25 bp)	AAGGCTTTTCCGGAATTCACATTGA	LOC_Os06g08110
Os.53987.1.S1_at--1146--607	1	Chr06:3933260..3933284 (25 bp)	GAGTATTGGTGCTCTACACTGTTAT	LOC_Os06g08110
Os.53987.1.S1_at--872--61	1	Chr06:3933180..3933204 (25 bp)	ATGCTGGTGCTGCTAGTATTAGGCT	LOC_Os06g08110

Target Sequence

GGCGCACTCTTGTTTAACAGTCTCGCGGGGTATGTTTACGACCAGGAAGTGGAGAGACAGCATGCCACAACAATGGACAC
TGACATTGCATGCCATGGCCCTAATTGTTTCAGACTTACATTTTGCGTTCTAGCTGGAGTGGCTAGCTTGGGTACATTGC
TGAGCATTGTTTTGACAGTGAGAATCCGACCAGTATATCAGATGCTCTATGCTGGTGGATCCTTCAGCCAGCCGAGGAGC
TCTGCTCACTGAGAAAGGCTTTTCCGGAATTCACATTGATGTAGCATGAGATCGAGATCTTGTTTGATGATATTCTTGGA
TCCACTGTATTCAGTTATGAGTATTGGTGCTCTACACTGTTATTTCAGCTATGAGGTTCAGGAATGAGAGAGGTGCTTTT
TGTTGAGTTTGTAATGCGATGCTGGTGCTGCTAGTATTAGGCT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis