Browse Element(s) Details

Os.27371.1.A1_at

Description

gb:AK065263.1
DB_XREF= gi:32975281
TID=Os.27371.1
CNT=31
FEA=FLmRNA
TIER=FL+Stack
STK=12
UG=Os.27371 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002K06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002K06, full insert sequence.
FL= gb:AK065263.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g08090	11/11	Heparanase-like protein 3 precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g08060	Os.54275.1.S1_at	11/11	6	+	3899489..3902057	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g08070	Os.41695.15.S1_s_at	11/11	6	+	3902683..3909686	transposon protein, putative, Mutator sub-class
LOC_Os06g08070	Os.41695.5.S1_x_at	8/11	6	+	3902683..3909686	transposon protein, putative, Mutator sub-class
LOC_Os06g08070	Os.41695.2.S1_x_at	4/11	6	+	3902683..3909686	transposon protein, putative, Mutator sub-class
LOC_Os06g08070	Os.41695.3.S1_x_at	4/11	6	+	3902683..3909686	transposon protein, putative, Mutator sub-class
LOC_Os06g08070	Os.41695.4.S1_x_at	3/11	6	+	3902683..3909686	transposon protein, putative, Mutator sub-class
LOC_Os06g08080	Os.167.1.S1_at	11/11	6	+	3918533..3926284	Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os06g08080	Os.55953.1.S1_at	1/11	6	+	3918533..3926284	Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os06g08090	Os.27371.1.A1_at	11/11	6	+	3923743..3926917	Heparanase-like protein 3 precursor, putative, expressed
LOC_Os06g08100	NA	NA	6	+	3931093..3931803	hypothetical protein
LOC_Os06g08110	Os.53987.1.S1_at	11/11	6	+	3933042..3936230	nodulin, putative, expressed
LOC_Os06g08120	OsAffx.16867.1.S1_at	1/11	6	+	3940688..3942448	expressed protein
LOC_Os06g08120	Os.25011.1.A1_at	1/11	6	+	3940688..3942448	expressed protein
LOC_Os06g08130	OsAffx.4762.1.S1_at	10/11	6	+	3945826..3946219	hypothetical protein
LOC_Os06g08140	Os.17303.1.S1_at	11/11	6	+	3946928..3951246	Protein phosphatase 2C containing protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0004566	molecular_function	beta-glucuronidase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.27371.1.A1_at--941--949	1	Chr06:3924310..3924331 (22 bp)	TCTCCAGGAATAACACTACTGCTGA	LOC_Os06g08090
Os.27371.1.A1_at--753--823	1	Chr06:3924274..3924298 (25 bp)	GGCAACACCACAAGCCAAGTTTCAG	LOC_Os06g08090
Os.27371.1.A1_at--321--103	1	Chr06:3924239..3924263 (25 bp)	AGGTGCTCATGCAAACACTGTGAAG	LOC_Os06g08090
Os.27371.1.A1_at--285--93	1	Chr06:3924196..3924220 (25 bp)	AGGCATCTTGCAGCTGGATCAATGA	LOC_Os06g08090
Os.27371.1.A1_at--507--273	1	Chr06:3924168..3924192 (25 bp)	AAGAATACCATCTTACTGCCAAAGA	LOC_Os06g08090
Os.27371.1.A1_at--1120--491	1	Chr06:3924138..3924162 (25 bp)	GCTTGCAGAGCCAAGTGATGCTGCT	LOC_Os06g08090
Os.27371.1.A1_at--213--763	1	Chr06:3924081..3924105 (25 bp)	GGGAAATCCCTAGGCTGGAGCCTGT	LOC_Os06g08090
Os.27371.1.A1_at--953--109	1	Chr06:3924053..3924077 (25 bp)	AGTGGATGCAGCACAGCCAATAGCT	LOC_Os06g08090
Os.27371.1.A1_at--580--169	1	Chr06:3924039..3924063 (25 bp)	AGCCAATAGCTGTGGCTCCTTACTC	LOC_Os06g08090
Os.27371.1.A1_at--125--429	1	Chr06:3923986..3924010 (25 bp)	CCTGCCCCTGCATGTAGTTAGATTA	LOC_Os06g08090
Os.27371.1.A1_at--1135--695	1	Chr06:3923885..3923909 (25 bp)	GTAGCTAAGCTTGCCCATCTCAAGA	LOC_Os06g08090

Target Sequence

TCTCCAGGAATAACACTACTGCTGATCAACCTCAGTGGCAACACCACAAGCCAAGTTTCAGTGACAAGTGAAGGTGCTCA
TGCAAACACTGTGAAGAAGCATAGCAGAAAGACCAGGCATCTTGCAGCTGGATCAATGAGAGAAGAATACCATCTTACTG
CCAAAGATGGCAGCTTGCAGAGCCAAGTGATGCTGCTGAATGGCAGGGCATTGGTTGCTGATGAAAATGGGGAAATCCCT
AGGCTGGAGCCTGTCAAAGTGGATGCAGCACAGCCAATAGCTGTGGCTCCTTACTCCATTGTGTTTGCTCACATACACAA
TTTCCCTGCCCCTGCATGTAGTTAGATTAGGGCAAGATTGTTTTTATTTTTGGGTGATTTGGTGTGATTGTTATTGTTGT
TATAGGAAAGGTGAAGTTAGGATGGGTAGCTAAGCTTGCCCATCTCAAGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis