Browse Element(s) Details


Os.25011.1.A1_at

Description gb:CA763315
DB_XREF= gi:25807354
DB_XREF=BR060013B11C04.ab1
CLONE=BR060013B11C04.ab1
TID=Os.25011.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.25011 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g081201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08080Os.167.1.S1_at11/116+3918533..3926284Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os06g08080Os.55953.1.S1_at1/116+3918533..3926284Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os06g08090Os.27371.1.A1_at11/116+3923743..3926917Heparanase-like protein 3 precursor, putative, expressed
LOC_Os06g08100NANA6+3931093..3931803hypothetical protein
LOC_Os06g08110Os.53987.1.S1_at11/116+3933042..3936230nodulin, putative, expressed
LOC_Os06g08120OsAffx.16867.1.S1_at1/116+3940688..3942448expressed protein
LOC_Os06g08120Os.25011.1.A1_at1/116+3940688..3942448expressed protein
LOC_Os06g08130OsAffx.4762.1.S1_at10/116+3945826..3946219hypothetical protein
LOC_Os06g08140Os.17303.1.S1_at11/116+3946928..3951246Protein phosphatase 2C containing protein, expressed
LOC_Os06g08154Os.50451.1.S1_at11/116+3955914..3960587Leucine Rich Repeat family protein, expressed
LOC_Os06g08154Os.50451.2.S1_at11/116+3955914..3960587Leucine Rich Repeat family protein, expressed
LOC_Os06g08154Os.51075.1.S1_x_at1/116+3955914..3960587Leucine Rich Repeat family protein, expressed
LOC_Os06g08170OsAffx.4763.1.S1_at11/116+3961447..3963777glycerol-3-phosphate transporter, putative, expressed
LOC_Os06g08180Os.23130.1.S1_at11/116+3965108..3968547expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.25011.1.A1_at--51--8731Chr05:20358150..20358174 (25 bp)
TGTCAGACTCTACACAAAGCCGTCG
NONE
Os.25011.1.A1_at--185--7391Chr05:20358058..20358082 (25 bp)
GTGAGAAGCCACTTCGAATCCCGTC
NONE
Os.25011.1.A1_at--875--4891Chr05:20358024..20358048 (25 bp)
GCTTCACTAGATCTGATTGTCCTCA
NONE
Os.25011.1.A1_at--184--52Chr06:3941377..3941396 (20 bp)
ATTGTCCTCATGAAGGAGCTCTGCC
LOC_Os06g08120
Os.25011.1.A1_at--554--10711Chr05:20357981..20358005 (25 bp)
TTGCTGGATCTTGCCGTTGTGTGAA
NONE
Os.25011.1.A1_at--565--5371Chr05:20357952..20357976 (25 bp)
GAAGAAGCCGCCGTATCTTGCTTTC
NONE
Os.25011.1.A1_at--56--8571Chr05:20357911..20357935 (25 bp)
TGGATTTGAGATTTCCTTCCTCCTG
NONE
Os.25011.1.A1_at--965--10351Chr05:20357878..20357902 (25 bp)
TTTTTCCTTTCGTTGATGGATGCGG
NONE
Os.25011.1.A1_at--897--10311Chr05:20357834..20357858 (25 bp)
TTTCTCCCCTTCTTGATGGCGTGGA
NONE
Os.25011.1.A1_at--142--4671Chr05:20357816..20357840 (25 bp)
GCGTGGATTTGTGGATTTCTTTCTC
NONE
Os.25011.1.A1_at--980--6331Chr05:20357709..20357733 (25 bp)
GATGCTATTGTGATCCGACGCGTTC
NONE
Target Sequence
TGTCAGACTCTACACAAAGCCGTCGCAGCCTGCAGCCGTNGCCGTCGCGCGAAGCTCCTGCCGCCGCCTGCCAGAGTGCC
GCTCCCATNGTCGTGAGAAGCCACTTCGAATCCCGTCGTCTNTGCTGCTTCACTAGATCTGATTGTCCTCATGAAGGAGC
TCTGCCCCTTTGCTGGATCTTGCCGTTGTGTGAAGAGGGAAGAAGCCGCCGTATCTTGCTTTCTTTGATGGATGTGGCAT
GGATTTGAGATTTCCTTCCTCCTGTTCTTTCTTTTTTCCTTTCGTTGATGGATGCGGCGTGGATTTGGGGACTCTTTTTC
TCCCCTTCTTGATGGCGTGGATTTGTGGATTTCTTTCTCTTTTTTTCCATCTTGATGAATGCAGCGATGCATATAATTTG
CACGTAGAAGGCTGTTTGGTAGATGAATCTATATGGAAGGCGATGCTATTGTGATCCGACGCGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25011.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis