Browse Element(s) Details


Os.50451.1.S1_at

Description gb:AK121252.1
DB_XREF= gi:37990875
TID=Os.50451.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50451 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013043B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023101N24, full insert sequence.
FL= gb:AK121252.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0815411/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08100NANA6+3931093..3931803hypothetical protein
LOC_Os06g08110Os.53987.1.S1_at11/116+3933042..3936230nodulin, putative, expressed
LOC_Os06g08120OsAffx.16867.1.S1_at1/116+3940688..3942448expressed protein
LOC_Os06g08120Os.25011.1.A1_at1/116+3940688..3942448expressed protein
LOC_Os06g08130OsAffx.4762.1.S1_at10/116+3945826..3946219hypothetical protein
LOC_Os06g08140Os.17303.1.S1_at11/116+3946928..3951246Protein phosphatase 2C containing protein, expressed
LOC_Os06g08154Os.50451.1.S1_at11/116+3955914..3960587Leucine Rich Repeat family protein, expressed
LOC_Os06g08154Os.50451.2.S1_at11/116+3955914..3960587Leucine Rich Repeat family protein, expressed
LOC_Os06g08154Os.51075.1.S1_x_at1/116+3955914..3960587Leucine Rich Repeat family protein, expressed
LOC_Os06g08170OsAffx.4763.1.S1_at11/116+3961447..3963777glycerol-3-phosphate transporter, putative, expressed
LOC_Os06g08180Os.23130.1.S1_at11/116+3965108..3968547expressed protein
LOC_Os06g08190OsAffx.27503.1.S1_at11/116+3971494..3971961hypothetical protein
LOC_Os06g08200NANA6+3974757..3975129hypothetical protein
LOC_Os06g08210OsAffx.15306.1.S1_s_at5/116+3976892..3977242hypothetical protein
LOC_Os06g08220Os.48515.1.S1_at11/116+3980607..3981577expressed protein
LOC_Os06g08220OsAffx.27505.1.S1_s_at11/116+3980607..3981577expressed protein
LOC_Os06g08230OsAffx.27506.1.S1_at11/116+3982595..3983271hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50451.1.S1_at--234--6411Chr06:3956639..3956663 (25 bp)
GATCTGTCCAAAAACCATCTGTCTG
LOC_Os06g08154
Os.50451.1.S1_at--513--4451Chr06:3956607..3956631 (25 bp)
GCCTTCTTTGCCCAATTTGACATAT
LOC_Os06g08154
Os.50451.1.S1_at--3--211Chr06:3956593..3956617 (25 bp)
ATTTGACATATCTCCACTTAAGTGA
LOC_Os06g08154
Os.50451.1.S1_at--599--5291Chr06:3956559..3956583 (25 bp)
GAATGGAACATTTCCCCTTGTCTGG
LOC_Os06g08154
Os.50451.1.S1_at--725--10791Chr06:3956542..3956566 (25 bp)
TTGTCTGGCCATTCGGTGCTAATTT
LOC_Os06g08154
Os.50451.1.S1_at--386--7931Chr06:3956508..3956532 (25 bp)
GGATCTGCGATATAACCAATTCAGT
LOC_Os06g08154
Os.50451.1.S1_at--242--3151Chr06:3956491..3956515 (25 bp)
AATTCAGTGGTGCAATCCCAAGATG
LOC_Os06g08154
Os.50451.1.S1_at--219--6291Chr06:3956462..3956486 (25 bp)
GATGAAACTTTTCCAGAGTTACGAA
LOC_Os06g08154
Os.50451.1.S1_at--520--9931Chr06:3956443..3956467 (25 bp)
TACGAATACTATTGCTTAAGGGAAA
LOC_Os06g08154
Os.50451.1.S1_at--557--8791Chr06:3956416..3956440 (25 bp)
TGTTCGAAGGGATGGTTCCAAACCA
LOC_Os06g08154
Os.50451.1.S1_at--236--7911Chr06:3956403..3956427 (25 bp)
GGTTCCAAACCAAGTGTGTCTACTT
LOC_Os06g08154
Target Sequence 
GATCTGTCCAAAAACCATCTGTCTGGCCCCTTGCCTTCTTTGCCCAATTTGACATATCTCCACTTAAGTGAGAATGAACT
GAATGGAACATTTCCCCTTGTCTGGCCATTCGGTGCTAATTTGAAGACAATGGATCTGCGATATAACCAATTCAGTGGTG
CAATCCCAAGATGTATAGATGAAACTTTTCCAGAGTTACGAATACTATTGCTTAAGGGAAACATGTTCGAAGGGATGGTT
CCAAACCAAGTGTGTCTACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50451.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis