Browse Element(s) Details


OsAffx.27505.1.S1_s_at

Description tigr:9634.m00758
TID=OsAffx.27505.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0822011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08154Os.50451.1.S1_at11/116+3955914..3960587Leucine Rich Repeat family protein, expressed
LOC_Os06g08154Os.50451.2.S1_at11/116+3955914..3960587Leucine Rich Repeat family protein, expressed
LOC_Os06g08154Os.51075.1.S1_x_at1/116+3955914..3960587Leucine Rich Repeat family protein, expressed
LOC_Os06g08170OsAffx.4763.1.S1_at11/116+3961447..3963777glycerol-3-phosphate transporter, putative, expressed
LOC_Os06g08180Os.23130.1.S1_at11/116+3965108..3968547expressed protein
LOC_Os06g08190OsAffx.27503.1.S1_at11/116+3971494..3971961hypothetical protein
LOC_Os06g08200NANA6+3974757..3975129hypothetical protein
LOC_Os06g08210OsAffx.15306.1.S1_s_at5/116+3976892..3977242hypothetical protein
LOC_Os06g08220Os.48515.1.S1_at11/116+3980607..3981577expressed protein
LOC_Os06g08220OsAffx.27505.1.S1_s_at11/116+3980607..3981577expressed protein
LOC_Os06g08230OsAffx.27506.1.S1_at11/116+3982595..3983271hypothetical protein
LOC_Os06g08240OsAffx.15307.1.S1_at9/116+3989606..3992035hypothetical protein
LOC_Os06g08250OsAffx.27507.1.S1_at10/116+3992929..3995160hypothetical protein
LOC_Os06g08270OsAffx.15308.1.S1_at11/116+4003935..4004619hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27505.1.S1_s_at--166--3811Chr06:3981433..3981457 (25 bp)
CTCCTGGGCTTGTACGCGGTCGTCT
LOC_Os06g08220
OsAffx.27505.1.S1_s_at--1094--10791Chr06:3981424..3981448 (25 bp)
TTGTACGCGGTCGTCTCAGTCGATT
LOC_Os06g08220
OsAffx.27505.1.S1_s_at--686--9931Chr06:3981421..3981445 (25 bp)
TACGCGGTCGTCTCAGTCGATTCCT
LOC_Os06g08220
OsAffx.27505.1.S1_s_at--143--7811Chr06:3981416..3981440 (25 bp)
GGTCGTCTCAGTCGATTCCTCGCGT
LOC_Os06g08220
OsAffx.27505.1.S1_s_at--307--4291Chr06:3981197..3981423 (25 bp)
CCTCGCGTCCCATCGAGGGTGGCGT
LOC_Os06g08220
OsAffx.27505.1.S1_s_at--749--3991Chr06:3981175..3981199 (25 bp)
CGTGGAGACGATCTGGACCGCGGCG
LOC_Os06g08220
OsAffx.27505.1.S1_s_at--625--9391Chr06:3981117..3981141 (25 bp)
TCGTCTTTGCCGGAGAGGTCAATGA
LOC_Os06g08220
OsAffx.27505.1.S1_s_at--884--7131Chr06:3981115..3981139 (25 bp)
GTCTTTGCCGGAGAGGTCAATGATA
LOC_Os06g08220
OsAffx.27505.1.S1_s_at--1034--4431Chr06:3981055..3981079 (25 bp)
GCCTTCTCCGAAGCCGAGCATGGCG
LOC_Os06g08220
OsAffx.27505.1.S1_s_at--502--871Chr06:3981036..3981060 (25 bp)
ATGGCGATGACGTCGTACATGCCGC
LOC_Os06g08220
OsAffx.27505.1.S1_s_at--1060--671Chr06:3981030..3981054 (25 bp)
ATGACGTCGTACATGCCGCCTTGCT
LOC_Os06g08220
Target Sequence 
CTCCTGGGCTTGTACGCGGTCGTCTCAGTCGATTCCTCGCGTCCCATCGAGGGTGGCGTGGAGACGATCTGGACCGCGGC
GGCAGCAGATCAGGGAGACGGCGGCGTGGCGAGGTCGTCTTTGCCGGAGAGGTCAATGATAGCGGTGATGCCTCGTAGAC
AGCCGGTGAGGGCGCCGCCTTCTCCGAAGCCGAGCATGGCGATGACGTCGTACATGCCGCCTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27505.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis