Browse Element(s) Details


OsAffx.27506.1.S1_at

Description tigr:9634.m00759
TID=OsAffx.27506.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0823011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08154Os.50451.1.S1_at11/116+3955914..3960587Leucine Rich Repeat family protein, expressed
LOC_Os06g08154Os.50451.2.S1_at11/116+3955914..3960587Leucine Rich Repeat family protein, expressed
LOC_Os06g08154Os.51075.1.S1_x_at1/116+3955914..3960587Leucine Rich Repeat family protein, expressed
LOC_Os06g08170OsAffx.4763.1.S1_at11/116+3961447..3963777glycerol-3-phosphate transporter, putative, expressed
LOC_Os06g08180Os.23130.1.S1_at11/116+3965108..3968547expressed protein
LOC_Os06g08190OsAffx.27503.1.S1_at11/116+3971494..3971961hypothetical protein
LOC_Os06g08200NANA6+3974757..3975129hypothetical protein
LOC_Os06g08210OsAffx.15306.1.S1_s_at5/116+3976892..3977242hypothetical protein
LOC_Os06g08220Os.48515.1.S1_at11/116+3980607..3981577expressed protein
LOC_Os06g08220OsAffx.27505.1.S1_s_at11/116+3980607..3981577expressed protein
LOC_Os06g08230OsAffx.27506.1.S1_at11/116+3982595..3983271hypothetical protein
LOC_Os06g08240OsAffx.15307.1.S1_at9/116+3989606..3992035hypothetical protein
LOC_Os06g08250OsAffx.27507.1.S1_at10/116+3992929..3995160hypothetical protein
LOC_Os06g08270OsAffx.15308.1.S1_at11/116+4003935..4004619hypothetical protein
LOC_Os06g08280Os.53574.1.S1_at11/116+4007140..4012540Protein kinase domain containing protein, expressed
LOC_Os06g08280Os.37872.1.S1_at11/116+4007140..4012540Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27506.1.S1_at--673--9591Chr06:3983208..3983232 (25 bp)
TCATACGCTGTCCTCTCTGTTTGTT
LOC_Os06g08230
OsAffx.27506.1.S1_at--350--5391Chr06:3983040..3983064 (25 bp)
GAAGCAGACGGTGGCCAGAGCCATT
LOC_Os06g08230
OsAffx.27506.1.S1_at--741--4351Chr06:3983026..3983050 (25 bp)
CCAGAGCCATTGTCGCCGAGGAGGT
LOC_Os06g08230
OsAffx.27506.1.S1_at--151--7271Chr06:3982944..3982968 (25 bp)
GTGCCTAGTCGCGAGTCGACCATGA
LOC_Os06g08230
OsAffx.27506.1.S1_at--442--8871Chr06:3982922..3982946 (25 bp)
TGATGAGGAGGTTGCCGGACCGCGA
LOC_Os06g08230
OsAffx.27506.1.S1_at--908--1791Chr06:3982674..3982928 (25 bp)
ACCGCGAGCCGGTTGTGTATTTGCA
LOC_Os06g08230
OsAffx.27506.1.S1_at--549--6631Chr06:3982663..3982687 (25 bp)
GTTGTGTATTTGCAGCGCCATTTGC
LOC_Os06g08230
OsAffx.27506.1.S1_at--40--1671Chr06:3982650..3982674 (25 bp)
AGCGCCATTTGCATGCCAAGCATTG
LOC_Os06g08230
OsAffx.27506.1.S1_at--263--591Chr06:3982638..3982662 (25 bp)
ATGCCAAGCATTGGTTGCTTCCGAA
LOC_Os06g08230
OsAffx.27506.1.S1_at--947--4931Chr06:3982631..3982655 (25 bp)
GCATTGGTTGCTTCCGAAATCCTAT
LOC_Os06g08230
OsAffx.27506.1.S1_at--640--6671Chr06:3982625..3982649 (25 bp)
GTTGCTTCCGAAATCCTATAATACT
LOC_Os06g08230
Target Sequence 
TCATACGCTGTCCTCTCTGTTTGTTCCTCGCGCCCCATCGCAGGTGGCGTGGAGGTGATCTGGAGCACTGGAGCAGCAAC
GACGACGATGGAAGCAGACGGTGGCCAGAGCCATTGTCGCCGAGGAGGTGGCACCAGCGTCGTGGTGAGATATTTGGTGG
CCAGGAGGACGGTGATGGGGATGGAGGTGCCTAGTCGCGAGTCGACCATGATGAGGAGGTTGCCGGACCGCGAGCCGGTT
GTGTATTTGCAGCGCCATTTGCATGCCAAGCATTGGTTGCTTCCGAAATCCTATAATACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27506.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis