Browse Element(s) Details


OsAffx.27507.1.S1_at

Description tigr:9634.m00761
TID=OsAffx.27507.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0825010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08180Os.23130.1.S1_at11/116+3965108..3968547expressed protein
LOC_Os06g08190OsAffx.27503.1.S1_at11/116+3971494..3971961hypothetical protein
LOC_Os06g08200NANA6+3974757..3975129hypothetical protein
LOC_Os06g08210OsAffx.15306.1.S1_s_at5/116+3976892..3977242hypothetical protein
LOC_Os06g08220Os.48515.1.S1_at11/116+3980607..3981577expressed protein
LOC_Os06g08220OsAffx.27505.1.S1_s_at11/116+3980607..3981577expressed protein
LOC_Os06g08230OsAffx.27506.1.S1_at11/116+3982595..3983271hypothetical protein
LOC_Os06g08240OsAffx.15307.1.S1_at9/116+3989606..3992035hypothetical protein
LOC_Os06g08250OsAffx.27507.1.S1_at10/116+3992929..3995160hypothetical protein
LOC_Os06g08270OsAffx.15308.1.S1_at11/116+4003935..4004619hypothetical protein
LOC_Os06g08280Os.53574.1.S1_at11/116+4007140..4012540Protein kinase domain containing protein, expressed
LOC_Os06g08280Os.37872.1.S1_at11/116+4007140..4012540Protein kinase domain containing protein, expressed
LOC_Os06g08290Os.49775.1.S1_at9/116+4015075..4018297terminal acidic SANT 1, putative, expressed
LOC_Os06g08300OsAffx.4765.1.S1_s_at3/116+4018886..4021127FAD-dependent oxidoreductase family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27507.1.S1_at--954--571Chr06:3994839..3994863 (25 bp)
ATCCATGGGTGGTCGCTGGACAGCA
LOC_Os06g08250
OsAffx.27507.1.S1_at--841--6131Chr06:3994771..3994792 (22 bp)
GAGGGAATCCGTCATCAAGAGGCAT
LOC_Os06g08250
OsAffx.27507.1.S1_at--187--9731Chr06:3994647..3994778 (25 bp)
TCAAGAGGCATCACAGCACGGGAAG
LOC_Os06g08250
OsAffx.27507.1.S1_at--321--2691Chr06:3994618..3994642 (25 bp)
AAGCTGAACAGAGGCGCCACCGGCG
LOC_Os06g08250
OsAffx.27507.1.S1_at--327--4691NONE
GCGGAGTGCGCCATGTTAGATATTA
NONE
OsAffx.27507.1.S1_at--1038--1251Chr06:3993780..3993804 (25 bp)
AGATATGTGTGACCAGTTCTACTGA
LOC_Os06g08250
OsAffx.27507.1.S1_at--216--4171Chr06:3993078..3993102 (25 bp)
CCCAATGGCCCAATGTTTACTTGCA
LOC_Os06g08250
OsAffx.27507.1.S1_at--133--10351Chr06:3993063..3993087 (25 bp)
TTTACTTGCAACTTTATCTCGCTCC
LOC_Os06g08250
OsAffx.27507.1.S1_at--271--9251Chr06:3993041..3993065 (25 bp)
TCCTTCTTCTCATGGCACATTCTGA
LOC_Os06g08250
OsAffx.27507.1.S1_at--640--2071Chr06:3993025..3993049 (25 bp)
ACATTCTGATATAGCGACACCTCCA
LOC_Os06g08250
OsAffx.27507.1.S1_at--1076--5631Chr06:3993010..3993034 (25 bp)
GACACCTCCAGATTTTATGGCGCAT
LOC_Os06g08250
Target Sequence 
ATCCATGGGTGGTCGCTGGACAGCAATGCCCGGGAGGCGAAGGAGCGGCTGGACCAGAAGCTGAGGAGCCAGAGGGAATC
CGTCATCAAGAGGCATCACAGCACGGGAAGCATCAAGCTGAACAGAGGCGCCACCGGCGGCGGCGGAGGGGGCGGGAGAT
CGACGGCGACGGCGGCGATGGGGGTGCAGAGGGAGGTGTACTCGAGGAAAGGGGTGATGCGGCGGCTGATGCGGTGGAGC
CGGCTGCGGTGGGACGCGGCGGAGCAGGCGGAGTGCGCCATGTTAGATATTATTTCTGTTGATAGATGTCAGATATGTGT
GACCAGTTCTACTGAGAGTACTGACATGAAGAAGTCATCAACTGATACTGTACATGAAGAAGTGGACGGTGTCACACGGT
GGCTCCCCAATGGCCCAATGTTTACTTGCAACTTTATCTCGCTCCTTCTTCTCATGGCACATTCTGATATAGCGACACCT
CCAGATTTTATGGCGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27507.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis