Browse Element(s) Details


Os.23130.1.S1_at

Description gb:AK069615.1
DB_XREF= gi:32979639
TID=Os.23130.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23130 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023019A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019A08, full insert sequence.
FL= gb:AK069615.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0818011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08120OsAffx.16867.1.S1_at1/116+3940688..3942448expressed protein
LOC_Os06g08120Os.25011.1.A1_at1/116+3940688..3942448expressed protein
LOC_Os06g08130OsAffx.4762.1.S1_at10/116+3945826..3946219hypothetical protein
LOC_Os06g08140Os.17303.1.S1_at11/116+3946928..3951246Protein phosphatase 2C containing protein, expressed
LOC_Os06g08154Os.50451.1.S1_at11/116+3955914..3960587Leucine Rich Repeat family protein, expressed
LOC_Os06g08154Os.50451.2.S1_at11/116+3955914..3960587Leucine Rich Repeat family protein, expressed
LOC_Os06g08154Os.51075.1.S1_x_at1/116+3955914..3960587Leucine Rich Repeat family protein, expressed
LOC_Os06g08170OsAffx.4763.1.S1_at11/116+3961447..3963777glycerol-3-phosphate transporter, putative, expressed
LOC_Os06g08180Os.23130.1.S1_at11/116+3965108..3968547expressed protein
LOC_Os06g08190OsAffx.27503.1.S1_at11/116+3971494..3971961hypothetical protein
LOC_Os06g08200NANA6+3974757..3975129hypothetical protein
LOC_Os06g08210OsAffx.15306.1.S1_s_at5/116+3976892..3977242hypothetical protein
LOC_Os06g08220Os.48515.1.S1_at11/116+3980607..3981577expressed protein
LOC_Os06g08220OsAffx.27505.1.S1_s_at11/116+3980607..3981577expressed protein
LOC_Os06g08230OsAffx.27506.1.S1_at11/116+3982595..3983271hypothetical protein
LOC_Os06g08240OsAffx.15307.1.S1_at9/116+3989606..3992035hypothetical protein
LOC_Os06g08250OsAffx.27507.1.S1_at10/116+3992929..3995160hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23130.1.S1_at--1111--2471Chr06:3965660..3965684 (25 bp)
AACAGCCAACATACCCAACTGGGAT
LOC_Os06g08180
Os.23130.1.S1_at--288--1611Chr06:3965627..3965651 (25 bp)
AGCTGCATAGCTGATTCACCTTGTT
LOC_Os06g08180
Os.23130.1.S1_at--346--9851Chr06:3965603..3965627 (25 bp)
TACAATCTGATGGTTGGTTCGTCAA
LOC_Os06g08180
Os.23130.1.S1_at--89--7911Chr06:3965588..3965612 (25 bp)
GGTTCGTCAATTGTGTGGGCCTAAT
LOC_Os06g08180
Os.23130.1.S1_at--522--3011Chr06:3965548..3965572 (25 bp)
AATGCATGATAACTGGCCAAGCCTA
LOC_Os06g08180
Os.23130.1.S1_at--750--10491Chr06:3965480..3965504 (25 bp)
TTAATCCAGGGCCATTGACACCATT
LOC_Os06g08180
Os.23130.1.S1_at--1135--1191Chr06:3965420..3965444 (25 bp)
AGTTAGTGCAAAGCAACCCCTTCTT
LOC_Os06g08180
Os.23130.1.S1_at--591--1951Chr06:3965317..3965341 (25 bp)
ACTGGTGAGTTCTGGTTCGGAGCCT
LOC_Os06g08180
Os.23130.1.S1_at--598--4471Chr06:3965296..3965320 (25 bp)
GCCTGAATCCTGACTTCATTCTGAT
LOC_Os06g08180
Os.23130.1.S1_at--43--10371Chr06:3965195..3965219 (25 bp)
TTTTTTCCCAATTGGAGTCCACCTG
LOC_Os06g08180
Os.23130.1.S1_at--951--7051Chr06:3965132..3965156 (25 bp)
GTAACTGTGTCTCTTTTATTCTCTA
LOC_Os06g08180
Target Sequence 
AACAGCCAACATACCCAACTGGGATTCTTATGCAGCTGCATAGCTGATTCACCTTGTTACAATCTGATGGTTGGTTCGTC
AATTGTGTGGGCCTAATTTTCCAAGCAAAGTTAATGCATGATAACTGGCCAAGCCTAGAAGTGGGTGGATGACAAAGCGG
GATGCATATAGCTGTACAAGTTAATCCAGGGCCATTGACACCATTCAATTCTGCTTGAATTTTCCAGCAGACAGAAACCA
AGTTAGTGCAAAGCAACCCCTTCTTTAACTGAAAGTCTGAAACACACAAACTACGATCAATAAACTCAGTGTTTATTGCA
ATGTAAGTGAGTGATGAGTTAGAACTGGTGAGTTCTGGTTCGGAGCCTGAATCCTGACTTCATTCTGATTTTCTCCTTCA
GTGAAGTCAAGCATAGATTGATCTTTATACGAGACAAGTAGAAAATCAAACACTGTAGTTGCTTTTTTTTTCCCAATTGG
AGTCCACCTGTGCCAACTGCCAATGCATAATTAGGTTTGATGAATATTGTAACTGTGTCTCTTTTATTCTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23130.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis