Browse Element(s) Details

OsAffx.15307.1.S1_at

Description

tigr:9634.m00760
TID=OsAffx.15307.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g08240	9/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g08180	Os.23130.1.S1_at	11/11	6	+	3965108..3968547	expressed protein
LOC_Os06g08190	OsAffx.27503.1.S1_at	11/11	6	+	3971494..3971961	hypothetical protein
LOC_Os06g08200	NA	NA	6	+	3974757..3975129	hypothetical protein
LOC_Os06g08210	OsAffx.15306.1.S1_s_at	5/11	6	+	3976892..3977242	hypothetical protein
LOC_Os06g08220	Os.48515.1.S1_at	11/11	6	+	3980607..3981577	expressed protein
LOC_Os06g08220	OsAffx.27505.1.S1_s_at	11/11	6	+	3980607..3981577	expressed protein
LOC_Os06g08230	OsAffx.27506.1.S1_at	11/11	6	+	3982595..3983271	hypothetical protein
LOC_Os06g08240	OsAffx.15307.1.S1_at	9/11	6	+	3989606..3992035	hypothetical protein
LOC_Os06g08250	OsAffx.27507.1.S1_at	10/11	6	+	3992929..3995160	hypothetical protein
LOC_Os06g08270	OsAffx.15308.1.S1_at	11/11	6	+	4003935..4004619	hypothetical protein
LOC_Os06g08280	Os.53574.1.S1_at	11/11	6	+	4007140..4012540	Protein kinase domain containing protein, expressed
LOC_Os06g08280	Os.37872.1.S1_at	11/11	6	+	4007140..4012540	Protein kinase domain containing protein, expressed
LOC_Os06g08290	Os.49775.1.S1_at	9/11	6	+	4015075..4018297	terminal acidic SANT 1, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.15307.1.S1_at--974--295	1	Chr06:3991984..3992003 (20 bp)	AATGGCCTACATTGCACTTGCGGAT	LOC_Os06g08240
OsAffx.15307.1.S1_at--594--843	1	NONE	GGCCTACATTGCACTTGCGGATAAT	NONE
OsAffx.15307.1.S1_at--1031--987	1	NONE	TACATTGCACTTGCGGATAATGAGG	NONE
OsAffx.15307.1.S1_at--245--647	1	Chr06:3989848..3989872 (25 bp)	GATAATGAGGTGGATCAGACGAACT	LOC_Os06g08240
OsAffx.15307.1.S1_at--898--965	1	Chr06:3989834..3989858 (25 bp)	TCAGACGAACTGGAGCGCTGCCGAA	LOC_Os06g08240
OsAffx.15307.1.S1_at--1036--255	1	Chr06:3989827..3989851 (25 bp)	AACTGGAGCGCTGCCGAAGTAGCAA	LOC_Os06g08240
OsAffx.15307.1.S1_at--679--235	1	Chr06:3989791..3989815 (25 bp)	AAAGCGGATGGTGGCCACCGCAGGG	LOC_Os06g08240
OsAffx.15307.1.S1_at--619--1015	1	Chr06:3989752..3989776 (25 bp)	TATTTGGTGGCCGAGAGGTCGATAG	LOC_Os06g08240
OsAffx.15307.1.S1_at--415--849	1	Chr06:3989718..3989742 (25 bp)	TGGCTAGTCGTGAGCCGGCGATCAT	LOC_Os06g08240
OsAffx.15307.1.S1_at--801--421	1	Chr06:3989671..3989695 (25 bp)	CCGCCTTCGCCGATAGGGCATGTGC	LOC_Os06g08240
OsAffx.15307.1.S1_at--627--423	1	Chr06:3989662..3989686 (25 bp)	CCGATAGGGCATGTGCCCGTGGCAT	LOC_Os06g08240

Target Sequence

AATGGCCTACATTGCACTTGCGGATAATGAGGTGGATCAGACGAACTGGAGCGCTGCCGAAGTAGCAACGGCGACGGTGA
AAGCGGATGGTGGCCACCGCAGGGGTGTCGTGGCGAGATATTTGGTGGCCGAGAGGTCGATAGGAGGGATGGTGGCTAGT
CGTGAGCCGGCGATCATGGTGAGGAGGTCGCCGTGGAAGCCGCCTTCGCCGATAGGGCATGTGCCCGTGGCAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis