Browse Element(s) Details


Os.37872.1.S1_at

Description gb:AK067771.1
DB_XREF= gi:32977789
TID=Os.37872.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.37872 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013117A13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013117A13, full insert sequence.
FL= gb:AK067771.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0828011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08230OsAffx.27506.1.S1_at11/116+3982595..3983271hypothetical protein
LOC_Os06g08240OsAffx.15307.1.S1_at9/116+3989606..3992035hypothetical protein
LOC_Os06g08250OsAffx.27507.1.S1_at10/116+3992929..3995160hypothetical protein
LOC_Os06g08270OsAffx.15308.1.S1_at11/116+4003935..4004619hypothetical protein
LOC_Os06g08280Os.53574.1.S1_at11/116+4007140..4012540Protein kinase domain containing protein, expressed
LOC_Os06g08280Os.37872.1.S1_at11/116+4007140..4012540Protein kinase domain containing protein, expressed
LOC_Os06g08290Os.49775.1.S1_at9/116+4015075..4018297terminal acidic SANT 1, putative, expressed
LOC_Os06g08300OsAffx.4765.1.S1_s_at3/116+4018886..4021127FAD-dependent oxidoreductase family protein, putative
LOC_Os06g08310Os.8093.2.S1_at11/116+4024531..4029376ATPase 8, plasma membrane-type, putative, expressed
LOC_Os06g08310Os.8093.1.S1_at11/116+4024531..4029376ATPase 8, plasma membrane-type, putative, expressed
LOC_Os06g08310Os.8093.2.S1_x_at11/116+4024531..4029376ATPase 8, plasma membrane-type, putative, expressed
LOC_Os06g08310OsAffx.5813.1.S1_x_at2/116+4024531..4029376ATPase 8, plasma membrane-type, putative, expressed
LOC_Os06g08320Os.12267.2.S1_s_at11/116+4032490..403317560S ribosomal protein L39, putative, expressed
LOC_Os06g08320Os.46185.1.S1_x_at1/116+4032490..403317560S ribosomal protein L39, putative, expressed
LOC_Os06g08329NANA6+4035587..4035761NA

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37872.1.S1_at--1155--931Chr06:4011775..4011799 (25 bp)
AGGAACACTTCCTTGGATGGCCCCG
LOC_Os06g08280
Os.37872.1.S1_at--830--4531Chr06:4011794..4011818 (25 bp)
GCCCCGGAGCTGTTGAATGGAAGCA
LOC_Os06g08280
Os.37872.1.S1_at--94--8791Chr06:4011965..4011989 (25 bp)
TGTTTTCTCCTTCGGAATTGTAATG
LOC_Os06g08280
Os.37872.1.S1_at--216--3331Chr06:4012001..4012025 (25 bp)
CACTGGTGAAGAGCCTTATGCCGAA
LOC_Os06g08280
Os.37872.1.S1_at--646--4211Chr06:4012021..4012045 (25 bp)
CCGAATTGCATTATGGCGCCATCAT
LOC_Os06g08280
Os.37872.1.S1_at--72--4611Chr06:4012182..4012206 (25 bp)
GCGACCCTCGGTGGAGGTCACTGAT
LOC_Os06g08280
Os.37872.1.S1_at--1024--2971Chr06:4012212..4012236 (25 bp)
AATGCTGGTCGTCGGAACCGTCAGA
LOC_Os06g08280
Os.37872.1.S1_at--384--431Chr06:4012371..4012395 (25 bp)
ATCTTGGAAGGGAGCCATGGCTTGC
LOC_Os06g08280
Os.37872.1.S1_at--1125--4331Chr06:4012385..4012409 (25 bp)
CCATGGCTTGCTCTGTACTAGTCTG
LOC_Os06g08280
Os.37872.1.S1_at--347--8871Chr06:4012463..4012487 (25 bp)
TGATGACGAATGCTTGATCCTCCCT
LOC_Os06g08280
Os.37872.1.S1_at--504--9311Chr06:4012483..4012507 (25 bp)
TCCCTGTGAGGTTGTGACGCTTTTC
LOC_Os06g08280
Target Sequence 
AGGAACACTTCCTTGGATGGCCCCGGAGCTGTTGAATGGAAGCAGCAGCCTTGTTTNTGAAAAGGTCGATGTTTTCTCCT
TCGGAATTGTAATGTGGGAGCTGCTCACTGGTGAAGAGCCTTATGCCGAATTGCATTATGGCGCCATCATAGGCGGGATT
GTAAACAACACCCTGNGCCCTCCGGTGCCCGAGTCATGCGACCCTCGGTGGAGGTCACTGATNGAGCAATGCTGGTCGTC
GGAACCGTCAGAAAGANCGAGCTTCACGGANGTTGGCAAGAGGCTACGGGCCATGGCAACCCCCTNTACCAAGGCGCAAC
CTCAGAAATAAAATTTTTTTTTTTGCCCCCTCAACCTCCTGTTNTGCGGCCTGTCTCCTGTACAAAATCTTGGAAGGGAG
CCATGGCTTGCTCTGTACTAGTCTGTACATGAATAAGGTAAAAAAGAGAAGAGAAAAAAAATGGTAATGCCTATAGAGAT
GATGACGAATGCTTGATCCTCCCTGTGAGGTTGTGACGCTTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37872.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis