Browse Element(s) Details


Os.12267.2.S1_s_at

Description gb:BM037912
DB_XREF= gi:16753533
DB_XREF=S114c12
CLONE=S114c12
TID=Os.12267.2
CNT=34
FEA=EST
TIER=Stack
STK=10
UG=Os.12267 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033070C14, full insert sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0832011/1160S ribosomal protein L39, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08280Os.53574.1.S1_at11/116+4007140..4012540Protein kinase domain containing protein, expressed
LOC_Os06g08280Os.37872.1.S1_at11/116+4007140..4012540Protein kinase domain containing protein, expressed
LOC_Os06g08290Os.49775.1.S1_at9/116+4015075..4018297terminal acidic SANT 1, putative, expressed
LOC_Os06g08300OsAffx.4765.1.S1_s_at3/116+4018886..4021127FAD-dependent oxidoreductase family protein, putative
LOC_Os06g08310Os.8093.2.S1_at11/116+4024531..4029376ATPase 8, plasma membrane-type, putative, expressed
LOC_Os06g08310Os.8093.1.S1_at11/116+4024531..4029376ATPase 8, plasma membrane-type, putative, expressed
LOC_Os06g08310Os.8093.2.S1_x_at11/116+4024531..4029376ATPase 8, plasma membrane-type, putative, expressed
LOC_Os06g08310OsAffx.5813.1.S1_x_at2/116+4024531..4029376ATPase 8, plasma membrane-type, putative, expressed
LOC_Os06g08320Os.12267.2.S1_s_at11/116+4032490..403317560S ribosomal protein L39, putative, expressed
LOC_Os06g08320Os.46185.1.S1_x_at1/116+4032490..403317560S ribosomal protein L39, putative, expressed
LOC_Os06g08329NANA6+4035587..4035761NA
LOC_Os06g08340Os.55579.1.S1_at11/116+4039785..4040764AP2 domain containing protein, expressed
LOC_Os06g08350OsAffx.15309.1.S1_at11/116+4050269..4051805expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12267.2.S1_s_at--84--7231Chr06:4033017..4033041 (25 bp)
GTCGCACAAGACGTTCCAGATCAAG
LOC_Os06g08320
Os.12267.2.S1_s_at--191--2191Chr06:4033012..4033036 (25 bp)
ACAAGACGTTCCAGATCAAGAAGAA
LOC_Os06g08320
Os.12267.2.S1_s_at--787--3371Chr06:4032790..4032814 (25 bp)
CACCAAGCTCGGGTTCTGAGCTTGG
LOC_Os06g08320
Os.12267.2.S1_s_at--508--5391Chr06:4032707..4032731 (25 bp)
GAAGCTAGGGCTTATGGGTTGCGTC
LOC_Os06g08320
Os.12267.2.S1_s_at--484--791Chr06:4032694..4032718 (25 bp)
ATGGGTTGCGTCGTGTTCGTTTCGA
LOC_Os06g08320
Os.12267.2.S1_s_at--59--8791Chr06:4032681..4032705 (25 bp)
TGTTCGTTTCGAGGTTTTGCCTGTC
LOC_Os06g08320
Os.12267.2.S1_s_at--307--10291Chr06:4032666..4032690 (25 bp)
TTTGCCTGTCCTGAAGAGACTATCA
LOC_Os06g08320
Os.12267.2.S1_s_at--396--5991Chr06:4032651..4032675 (25 bp)
GAGACTATCAGTAGCTGTGTGTATC
LOC_Os06g08320
Os.12267.2.S1_s_at--667--3891Chr06:4032637..4032661 (25 bp)
CTGTGTGTATCTTGGAGCATCATAA
LOC_Os06g08320
Os.12267.2.S1_s_at--709--3611Chr06:4032627..4032651 (25 bp)
CTTGGAGCATCATAATTTTGCTGAT
LOC_Os06g08320
Os.12267.2.S1_s_at--913--10271Chr06:4032611..4032635 (25 bp)
TTTGCTGATTAAAGAACCACTTTCT
LOC_Os06g08320
Target Sequence 
GTCGCACAAGACGTTCCAGATCAAGAAGAAGCTGGCGAAGAAGATGCGCCAGAACCGCCCCATCCCGTACTGGATCCGCA
TGCGCACCGACAACACCATCAGGTACAACGCGAAGCNGCNGGCACTGGCGCCGCACCAAGCTCGGGTTCTGAGCTTGGGG
AGGAGAGGAGGACGAGGCGCCGGACGCCGCTGCCCTGGGAAGAAGAAGAAGAAGGAGAAGCTAGGGCTTATGGGTTGCGT
CGTGTTCGTTTCGAGGTTTTGCCTGTCCTGAAGAGACTATCAGTAGCTGTGTGTATCTTGGAGCATCATAATTTTGCTGA
TTAAAGAACCACTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12267.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis