Browse Element(s) Details


Os.10521.1.S1_at

Description gb:AK065581.1
DB_XREF= gi:32975599
TID=Os.10521.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10521 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013034J09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013034J09, full insert sequence.
FL= gb:AK065581.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1794011/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g079322/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17890OsAffx.2659.1.S1_at11/112+10362120..10362746hypothetical protein
LOC_Os02g17900OsAffx.24297.1.S1_at11/112+10363977..10365534Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative, expressed
LOC_Os02g17910Os.17563.2.S1_a_at11/112+10371054..10380937Casein kinase I, delta isoform, putative, expressed
LOC_Os02g17910Os.17563.3.A1_at10/112+10371054..10380937Casein kinase I, delta isoform, putative, expressed
LOC_Os02g17910Os.49790.1.S1_x_at10/112+10371054..10380937Casein kinase I, delta isoform, putative, expressed
LOC_Os02g17920Os.17563.1.S1_at11/112+10378455..10380695Lactoylglutathione lyase, putative, expressed
LOC_Os02g17930Os.45422.1.S1_x_at2/112+10382365..10384763hypothetical protein
LOC_Os02g17940Os.10521.1.S1_at11/112+10386282..10390288oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os02g17940OsAffx.22492.1.S1_x_at3/112+10386282..10390288oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os02g17940OsAffx.22492.1.S1_at1/112+10386282..10390288oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os02g17949NANA2+10398695..10399063NA
LOC_Os02g17960OsAffx.18924.2.S1_x_at5/112+10407372..10415109transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17960OsAffx.19842.1.S1_at3/112+10407372..10415109transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17960OsAffx.20497.1.S1_at2/112+10407372..10415109transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17960OsAffx.19421.2.S1_at2/112+10407372..10415109transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17960OsAffx.3348.1.S1_at1/112+10407372..10415109transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17960OsAffx.18924.3.S1_at1/112+10407372..10415109transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17960OsAffx.22387.1.S1_at1/112+10407372..10415109transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009813biological_processflavonoid biosynthesis
GO:0010261biological_processorgan senescence (sensu Magnoliophyta)
GO:0016682molecular_functionoxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10521.1.S1_at--815--6411Chr02:10389784..10389808 (25 bp)
GATCTCCCTGGCCATGTTATACAGC
LOC_Os02g17940
Os.10521.1.S1_at--1096--8431Chr02:10389793..10389817 (25 bp)
GGCCATGTTATACAGCGTGAACGAT
LOC_Os02g17940
Os.10521.1.S1_at--888--9351Chr02:10389888..10389912 (25 bp)
TCGAAGAGTTCAGGGCCGGGATCTT
LOC_Os02g17940
Os.10521.1.S1_at--892--6011Chr02:10389930..10389954 (25 bp)
GAGAGAGGTACATCGACTCCCTGAG
LOC_Os02g17940
Os.10521.1.S1_at--1028--5711Chr02:10389944..10389968 (25 bp)
GACTCCCTGAGGATCTGATCTCGAA
LOC_Os02g17940
Os.10521.1.S1_at--731--4993Chr06:3894170..3894194 (25 bp)
GCATGATTGTTGCAAGCTCAGCAGC
NONE
Os.10521.1.S1_at--10--1593Chr06:3894184..3894208 (25 bp)
AGCTCAGCAGCTTTCAGTAGCAAGT
NONE
Os.10521.1.S1_at--569--3451Chr02:10390001..10390025 (25 bp)
CAGTAGCAAGTATTTCCTTGGGAAA
LOC_Os02g17940
Os.10521.1.S1_at--194--5531Chr02:10390058..10390082 (25 bp)
GAAAACATGTCGCAAGTTCTCGTAA
LOC_Os02g17940
Os.10521.1.S1_at--335--331Chr02:10390131..10390155 (25 bp)
ATGTAATAACCCCTCCGTTTCATAT
LOC_Os02g17940
Os.10521.1.S1_at--781--2491Chr02:10390242..10390266 (25 bp)
AACTACGGTACTGCATTCTTTTCAA
LOC_Os02g17940
Target Sequence 
GATCTCCCTGGCCATGTTATACAGCGTGAACGATGAGAAAGACATTGAGCCGGCGGCTGGTTTGCTGGATGAGAATCGGC
CTGCAAGATACAGGAAAGTGAGCGTCGAAGAGTTCAGGGCCGGGATCTTTGGANAATTCTCTCGAGGAGAGAGGTACATC
GACTCCCTGAGGATCTGATCTCGAAGAGAGCATGATTGTTGCAAGCTCAGCAGCTTTCAGTAGCAAGTATTTCCTTGGGA
AAACAAACATTTTTCCCCCCTTAAGGGAATTGCTGAAAACATGTCGCAAGTTCTCGTAAAGAAAAACTTTTAAATTTAAC
TATGGTATAATTGTAATATAATTACATATGTAATAACCCCTCCGTTTCATATTATAAGACTTTCTAGCATTGTCCACATT
TATATAGATGTGGGCAATGCCATAAAGTCTTACAATATGAAAACGGAGGAAGTCNNNNNTTGTAACTACGGTACTGCATT
CTTTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10521.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis