Browse Element(s) Details


OsAffx.24297.1.S1_at

Description tigr:9630.m01680
TID=OsAffx.24297.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glycosyl hydrolases family 16, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1790011/11Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17860OsAffx.2658.1.S1_at11/112+10341827..10347288retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g17860OsAffx.2658.1.S1_x_at11/112+10341827..10347288retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g17860Os.9572.1.S1_at10/112+10341827..10347288retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g17870Os.7497.1.S1_at11/112+10351704..10354070Micro-fibrillar-associated protein 1 C-terminus containing protein, expressed
LOC_Os02g17880OsAffx.24928.1.S1_at11/112+10359558..10361067Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative
LOC_Os02g17880OsAffx.12340.1.S1_at1/112+10359558..10361067Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative
LOC_Os02g17890OsAffx.2659.1.S1_at11/112+10362120..10362746hypothetical protein
LOC_Os02g17900OsAffx.24297.1.S1_at11/112+10363977..10365534Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative, expressed
LOC_Os02g17910Os.17563.2.S1_a_at11/112+10371054..10380937Casein kinase I, delta isoform, putative, expressed
LOC_Os02g17910Os.17563.3.A1_at10/112+10371054..10380937Casein kinase I, delta isoform, putative, expressed
LOC_Os02g17910Os.49790.1.S1_x_at10/112+10371054..10380937Casein kinase I, delta isoform, putative, expressed
LOC_Os02g17920Os.17563.1.S1_at11/112+10378455..10380695Lactoylglutathione lyase, putative, expressed
LOC_Os02g17930Os.45422.1.S1_x_at2/112+10382365..10384763hypothetical protein
LOC_Os02g17940Os.10521.1.S1_at11/112+10386282..10390288oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os02g17940OsAffx.22492.1.S1_x_at3/112+10386282..10390288oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os02g17940OsAffx.22492.1.S1_at1/112+10386282..10390288oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009664biological_processcell wall organization and biogenesis (sensu Magnoliophyta)
GO:0005618cellular_componentcell wall
GO:0005737cellular_componentcytoplasm
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24297.1.S1_at--1151--511Chr02:10364877..10364901 (25 bp)
ATCGACTTTGAGTTCTTAGGCAACG
LOC_Os02g17900
OsAffx.24297.1.S1_at--941--9271Chr02:10365018..10365042 (25 bp)
TCCTGGACCGCTTGCATGATTGTGT
LOC_Os02g17900
OsAffx.24297.1.S1_at--1075--8651Chr02:10365123..10365146 (24 bp)
TGTGGTACATCGACGGGACACCCAT
LOC_Os02g17900
OsAffx.24297.1.S1_at--682--3531Chr02:10365144..10365168 (25 bp)
CATCCGAGTGTTCCGCAACTATGAA
LOC_Os02g17900
OsAffx.24297.1.S1_at--671--2331Chr02:10365170..10365194 (25 bp)
AAAGCAACGGTGTGGCGTTCCCAAT
LOC_Os02g17900
OsAffx.24297.1.S1_at--852--6691Chr02:10365186..10365210 (25 bp)
GTTCCCAATGAAGCGGCCGATGTAT
LOC_Os02g17900
OsAffx.24297.1.S1_at--802--5291Chr02:10365264..10365288 (25 bp)
GAAGGCTGACTGGTCCAAGGCACCT
LOC_Os02g17900
OsAffx.24297.1.S1_at--440--3211Chr02:10365279..10365303 (25 bp)
CAAGGCACCTTTTGTCGCGAACTAC
LOC_Os02g17900
OsAffx.24297.1.S1_at--70--751Chr02:10365320..10365344 (25 bp)
ATGTATGCGAGTGCTCTACTACCTC
LOC_Os02g17900
OsAffx.24297.1.S1_at--868--1111Chr02:10365415..10365439 (25 bp)
AGTGATTCAGAGCTCGCACGGATGC
LOC_Os02g17900
OsAffx.24297.1.S1_at--298--2531Chr02:10365469..10365493 (25 bp)
AACTATTGCGTTGATCCCAAGAGAT
LOC_Os02g17900
Target Sequence 
ATCGACTTTGAGTTCTTAGGCAACGAGACCGGCCAACCCTACACCATCCACACCAACATCTATGCCAATGGCGTCGGCGA
CAAGGAGATGCAGTTCAAGCCGTGGTTCAACCCCACCGATGGCTACCACAACTACACCGTCTCCTGGACCGCTTGCATGA
TTGTGTGGTACATCGACGGGACACCCATCCGAGTGTTCCGCAACTATGAAAAAAGCAACGGTGTGGCGTTCCCAATGAAG
CGGCCGATGTATGGGTACTCGAGCATATGGGCGGCGGAGGATTGGGCAACACAGGGTGGCCGTGTGAAGGCTGACTGGTC
CAAGGCACCTTTTGTCGCGAACTACCATGGCCTCAACATCAATGTATGCGAGTGCTCTACTACCTCTGGTGGAGGCAACA
GTTGTGCTGCAAAATGTGCTTCAACCTATAATAGCAAGTCATCAGTATGCCAGTTGAGTGATTCAGAGCTCGCACGGATG
CGGAAAGTGCAGGATGAGTATAGGATCTACAACTATTGCGTTGATCCCAAGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24297.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis